Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I07
         (381 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.69 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.8  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   3.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   3.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   3.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   3.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   3.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   4.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 0.69
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 72   SAPRGPSKQKRLRQPQPSRNN 10
            ++ + P  Q++  Q QPSRNN
Sbjct: 1283 TSSQSPGNQQQTIQTQPSRNN 1303


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 371 RPADKPFSKEPNNVTNLHSFRYNGL 297
           RP+ K F K P N T   +F   G+
Sbjct: 51  RPSFKTFDKGPKNYTTPVNFVAGGI 75


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 LCFLVHYCESLPVRV 266
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 LCFLVHYCESLPVRV 266
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 LCFLVHYCESLPVRV 266
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 LCFLVHYCESLPVRV 266
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 222 LCFLVHYCESLPVRV 266
           LC+ ++Y E +PV V
Sbjct: 102 LCYNINYIEQIPVPV 116


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 81   QPSSAPRGPSKQKRLRQPQPSR 16
            Q    P+  S+Q + +QPQP +
Sbjct: 1512 QQQQQPQQQSQQPQQQQPQPQQ 1533


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,323
Number of Sequences: 438
Number of extensions: 1666
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)