Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I06
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   4.2  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    26   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.3  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    25   7.3  
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||...    25   9.6  

>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 332  SIVCYNFKIYLVAFYSIELHMQCFLFSMKYL 240
            ++V ++F  Y + FYSI   M     S+K+L
Sbjct: 997  NVVKHDFYAYAIGFYSISFPMYAIHASVKFL 1027


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 371 FFGS*LGRYLNWLSIVCYNFKI 306
           + GS L RY NWL   C  F +
Sbjct: 158 YIGSKLSRYYNWLKYNCRFFSV 179


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 550  QHFQSLAVDWKNCLHRHNHKTIKCVER 470
            Q F  + V  +  LH+ N+ +  C+ER
Sbjct: 3305 QKFDEIEVPGQYLLHKDNNNSFSCIER 3331


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 516 IAYTDTITRRSNVLKDSGNWKYNI 445
           + Y DT+ RR + LK   NW +++
Sbjct: 93  VLYLDTVIRRDHPLKRYENWIWHV 116


>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 465

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 57  CLLQLAXXPHMSVLFTKSLTF 119
           C+L+LA   H+S LFT  L +
Sbjct: 167 CILKLAAKLHLSALFTTCLIY 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,156,475
Number of Sequences: 5004
Number of extensions: 37380
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)