Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I06
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89...    29   4.3  
11_01_0150 + 1256029-1256137,1256206-1256247,1256345-1256455,125...    28   7.5  

>10_01_0069 +
           890634-890941,892146-892395,893146-893175,894956-895135,
           895418-895669
          Length = 339

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 571 WHLSNN*QHFQSLAVDWKNCLHRHNHKT--IKCVERLWKLEI 452
           W L+N+ +H  S   +W+  L    HKT   K V+  W  EI
Sbjct: 288 WELTNDDRHKISTLPEWRGTLDIFVHKTGPYKTVDEFWDGEI 329


>11_01_0150 +
           1256029-1256137,1256206-1256247,1256345-1256455,
           1256538-1256600,1256678-1256910,1256999-1257223,
           1257319-1257411,1257493-1257591,1257840-1257956
          Length = 363

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 550 QHFQSLAVDWKNCLHRHNHKTIKCVERLWK 461
           +H +SL ++W+  LHRH  K  K +++  K
Sbjct: 207 EHAKSLWINWRGDLHRHFVKPAKTMQQAIK 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,072,647
Number of Sequences: 37544
Number of extensions: 185795
Number of successful extensions: 328
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)