Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I05
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0603 + 4937472-4938351,4938597-4938689,4938820-4939589,493... 31 1.0
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019... 29 4.1
07_01_0844 + 6855195-6855342,6855752-6855802,6856460-6856530,685... 28 5.5
05_06_0046 - 25157093-25157431,25157810-25157928,25158024-251581... 28 5.5
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 28 5.5
07_03_1265 + 25304408-25304545,25304895-25305032,25305746-253058... 28 7.2
03_01_0454 - 3484319-3486265 28 7.2
08_02_0741 - 20618319-20618523,20618627-20618684,20618807-206191... 27 9.6
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 27 9.6
03_02_1029 - 13488535-13493037 27 9.6
>12_01_0603 +
4937472-4938351,4938597-4938689,4938820-4939589,
4939706-4939809,4940026-4940548,4940697-4941074
Length = 915
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 356 RVIQSIPMVSSLKEPSSFSKPHVMLPSSFSSLYLRII*ATGFFSL-VLVGLYFC 514
+ ++ P V S K+P S+P V L +FSS+ RI FS+ LV + C
Sbjct: 207 KAMEKCPFVFSCKDPEVISEPAVNLSKNFSSIRSRIEELVSKFSVRDLVEEFIC 260
>07_03_1461 -
26700613-26700621,26700784-26700851,26701778-26701919,
26702011-26702318,26702415-26702481,26702543-26702664,
26702763-26702815,26702924-26703006,26703092-26703160,
26703235-26703633
Length = 439
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 567 RQYTRPQEPIRAPVRNTQQKYSPTNTREKKPVA 469
R YTR QEP R P+ Q+Y P + +++ A
Sbjct: 276 RLYTRNQEPARRPLPPMAQQYDPDQSWKQEQSA 308
>07_01_0844 +
6855195-6855342,6855752-6855802,6856460-6856530,
6856736-6856855,6857043-6857161,6857377-6857458,
6857592-6857597
Length = 198
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = -1
Query: 467 KLFVNTEMKTRMEALHGASKTTTVLLRKKPLE*TVLPAVNMVMSTLMVLNANTITK 300
+LF EM+ M L A KTT + K T +P +++ + L L A T K
Sbjct: 11 RLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIDIYLYVLSNLKAITEEK 66
>05_06_0046 - 25157093-25157431,25157810-25157928,25158024-25158189,
25158289-25158415,25158490-25158590,25158719-25158905,
25159000-25159100,25159220-25160194,25160325-25160423,
25160500-25160972,25161307-25161420,25161830-25161900,
25162015-25162086,25162334-25162377
Length = 995
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 486 EKKPVAQIIRKYRDENEDGSITWGFENDD-GSFKEETIGID 367
++KPV++ +K D++ D I + FEN D K ET D
Sbjct: 920 QRKPVSRDQQKLLDDSSDLLIVYSFENQDRAKSKAETKAAD 960
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/51 (43%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 539 SAPPLETHNRNTAQLIQEKRNQSLKLFVNTEMKTR--MEALHGASKTTTVL 393
SA TH +T + R LK+ V T KTR M L GA TTTVL
Sbjct: 377 SADMTTTHRPSTGERRSVTRESVLKMDVRTPSKTRPTMTQLKGA--TTTVL 425
>07_03_1265 +
25304408-25304545,25304895-25305032,25305746-25305807,
25306321-25306423,25306560-25306636,25306915-25306971,
25307202-25307323,25307551-25307667,25308188-25308273,
25308387-25308560,25308671-25308940
Length = 447
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 330 DGLKREYNYETGIL--CDKNKEEKDQKGFIDYQENKAVLPNGITID 199
+ L RE TG++ C ++EK GF+DY + ++ + +T++
Sbjct: 124 EALLREVFQSTGLVEGCKLIRKEKSSYGFVDYYDRRSAALSILTLN 169
>03_01_0454 - 3484319-3486265
Length = 648
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 288 CDKNKEEKDQKGFIDYQENKAVLPNGIT 205
C+K + E D GF+D NK +LPN +T
Sbjct: 482 CEKGQVE-DAFGFLDEMINKGILPNIMT 508
>08_02_0741 -
20618319-20618523,20618627-20618684,20618807-20619164,
20619253-20619337,20619452-20619726,20619807-20620039,
20620371-20620398
Length = 413
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 368 SIPMVSSLKEPSSFSKPHVMLPSSFSS 448
S+P+VS + P + V LP SFSS
Sbjct: 259 SVPLVSGVSNPITIVSQAVTLPKSFSS 285
>04_04_1571 +
34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/69 (27%), Positives = 28/69 (40%)
Frame = +1
Query: 385 FLKRTVVVFEAPCNASILVFISVFTNNLSDWFLFSCISWAVFLLCVSNGGADWLLRSCVL 564
F K++ F AS L I +F + + + WA C+SN G + +L
Sbjct: 304 FEKKSYTYFIVQGMASALSKIGIFATTAAKDYDLHLLPWASVAACISNVGPE----EVIL 359
Query: 565 SDGLDFFFL 591
G F FL
Sbjct: 360 RQGRAFCFL 368
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -3
Query: 576 QPVRQYTRPQEPIRAPVRNTQQKYSPTNT-REKKPVAQIIRKYRD 445
QP R RPQ +R P QQ T R P Q ++ RD
Sbjct: 285 QPPRPAPRPQFVVRVPQPQQQQNQQGTRAPRPPTPTVQPVQSRRD 329
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,137
Number of Sequences: 37544
Number of extensions: 360970
Number of successful extensions: 992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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