Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I05
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY040668-1|AAL09919.1|  338|Homo sapiens MHC class I antigen pro...    30   6.1  

>AY040668-1|AAL09919.1|  338|Homo sapiens MHC class I antigen
           protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 6.1
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
 Frame = -3

Query: 639 RPXRPIFRPETKPFVXXXXEIQPVRQYTRPQEPIRAP-VRNTQQKYSPTNTREKKPVAQI 463
           RP R   R  T  +V     ++  R    P+E  RAP +     +Y   NT+  K  AQ 
Sbjct: 13  RPGRGEPRFITVGYVDDTQFVRFDRDAASPREEPRAPWIEQEGPEYWDRNTQICKAKAQT 72

Query: 462 -------IRKYRDENEDGSITW 418
                  +R Y +++EDGS TW
Sbjct: 73  DRVGLRNLRGYYNQSEDGSHTW 94


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,828,450
Number of Sequences: 237096
Number of extensions: 2070974
Number of successful extensions: 4672
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4672
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)