Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I05
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 30 1.2
AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical ... 30 1.6
AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode ast... 30 1.6
U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70686-3|CAA94611.1| 364|Caenorhabditis elegans Hypothetical pr... 29 2.8
U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock prot... 29 2.8
U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock prot... 29 2.8
U20142-1|AAB60234.1| 112|Caenorhabditis elegans protein ( Caeno... 29 2.8
AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical ... 29 2.8
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 28 4.9
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 28 4.9
Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z71264-5|CAA95829.1| 241|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical p... 27 8.6
Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical pr... 27 8.6
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 27 8.6
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 27 8.6
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 30.3 bits (65), Expect = 1.2
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Frame = +1
Query: 235 FLVVYKTLLIFFFLVLVAQDTSFVIVFAFKTIRVDITIFTAGNTVYSNGFFLKRTVVVFE 414
F+ + + I F LV++ F+I+ ++V+ T+ A N + F ++
Sbjct: 90 FMTIIACIGIVFMLVIIL----FIILVVELDLQVN-TMSQASNKYHKRLLFEFMVHIMIS 144
Query: 415 AP--CNASILVFISVFTNNLSDWFLFSCISWAVF 510
P + +L+F+ +F N+ D + IS+AVF
Sbjct: 145 LPFFILSPLLIFLKIFLNDTVDVSFLTSISFAVF 178
>AL132943-1|CAC14390.1| 1042|Caenorhabditis elegans Hypothetical
protein Y116F11B.3 protein.
Length = 1042
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/46 (28%), Positives = 28/46 (60%)
Frame = +1
Query: 343 TIFTAGNTVYSNGFFLKRTVVVFEAPCNASILVFISVFTNNLSDWF 480
+++T N V++NGF+ +V+ E + S++ ++ + LSD+F
Sbjct: 412 SVYTGTNVVFTNGFYDPWSVLGQETSRDFSVVAYVIPGASYLSDFF 457
>AF022979-10|AAB69905.3| 651|Caenorhabditis elegans Nematode
astacin protease protein32 protein.
Length = 651
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 447 DENEDGSITWGFENDDGSFKEETIGIDCITRGKY 346
+E D W FEN++G + ET+ + + G Y
Sbjct: 28 EEERDRKFDWKFENENGKPEHETVTVPKLPDGSY 61
>U41026-6|AAA82353.1| 1081|Caenorhabditis elegans Hypothetical
protein C28G1.4 protein.
Length = 1081
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = -3
Query: 558 TRPQEPIRAPVRNTQQKYSPTNTREKKPVAQ---IIRKYRDENEDGSITWGFENDDGSFK 388
T+ QE + V+ ++KY TN +E KPV + + Y+ +N+ S + S K
Sbjct: 66 TKVQEEVTEEVK-PKRKYVKTNIKEPKPVPERVYVRGPYKKKNKPNSSAVFVQPQVTSPK 124
Query: 387 EETIGIDCIT 358
E+ ID IT
Sbjct: 125 EQQKRIDIIT 134
>Z70686-3|CAA94611.1| 364|Caenorhabditis elegans Hypothetical
protein R10H10.3 protein.
Length = 364
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 319 FKTIRVDITIFTAGNTVYSNGFFLKRTVVVFEAPCNASILVFISVFTN 462
+ T R + F + T+ +GF ++ V APCN I + ++ N
Sbjct: 126 YTTTRNAVVTFESNPTIQKSGFSMQYQSVNTVAPCNRDIFLIVNGLAN 173
>U41109-5|AAB37035.1| 149|Caenorhabditis elegans Heat shock protein
protein 17,isoform a protein.
Length = 149
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 351 KYGYVDPDGLKREYNYETGILCDKNKEEKDQKGF--IDYQENKAVLPNGITIDL 196
KYG V+ + R+YN TG+ ++ K E G + Y++N+ P I I +
Sbjct: 92 KYGQVERHFV-RKYNLPTGVRPEQIKSELSNNGVLTVKYEKNQEQQPKSIPITI 144
>U41109-4|AAQ62453.1| 148|Caenorhabditis elegans Heat shock protein
protein 17,isoform b protein.
Length = 148
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -3
Query: 351 KYGYVDPDGLKREYNYETGILCDKNKEEKDQKGF--IDYQENKAVLPNGITIDL 196
KYG V+ + R+YN TG+ ++ K E G + Y++N+ P I I +
Sbjct: 91 KYGQVERHFV-RKYNLPTGVRPEQIKSELSNNGVLTVKYEKNQEQQPKSIPITI 143
>U20142-1|AAB60234.1| 112|Caenorhabditis elegans protein (
Caenorhabditis elegansSPE-26 protein (spe-26) gene,
complete cds. ).
Length = 112
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +1
Query: 319 FKTIRVDITIFTAGNTVYSNGFFLKRTVVVFEAPCNASILVFISVFTN 462
+ T R + F + T+ +GF ++ V APCN I + ++ N
Sbjct: 62 YTTTRNAVVTFESNPTIQKSGFSMQYQSVNTVAPCNRDIFLIVNGLAN 109
>AF100306-1|AAC68921.1| 423|Caenorhabditis elegans Hypothetical
protein T24C4.2 protein.
Length = 423
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = +3
Query: 222 GQPYFLGSL*NPSDLFLPCSC----RTGYQF-RNCIRV*DHQGRH-NH 347
G P G P+ +LPCSC R +QF C+R+ + RH NH
Sbjct: 111 GVPRMRGEGKRPNQNYLPCSCTAMIRLNFQFHEQCLRLTSLETRHSNH 158
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 442 FISVFTNNLSDWFLFSCISWAVFLLCVSNGGADWLLRSCVL 564
F +VF N +S W LF I+ F + SN W +C L
Sbjct: 155 FFAVFFNIISAWTLFYLINSFSFSIPWSNCANSWSGENCTL 195
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +1
Query: 442 FISVFTNNLSDWFLFSCISWAVFLLCVSNGGADWLLRSCVL 564
F +VF N +S W LF I+ F + SN W +C L
Sbjct: 155 FFAVFFNIISAWTLFYLINSFSFSIPWSNCANSWSGENCTL 195
>Z81139-4|CAB03479.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.4 protein.
Length = 358
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 428 ALHGASKTTTVLLRKKPLE*TVLPAVNMV 342
ALHGA+ T T+LL KP T L + V
Sbjct: 297 ALHGAACTLTLLLANKPFRMTTLSHLKYV 325
>Z71264-5|CAA95829.1| 241|Caenorhabditis elegans Hypothetical
protein K07G5.2 protein.
Length = 241
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 516 QQKYSPT-NTREKKPVAQIIRKYRDENEDGSITWGFENDDGSFKE 385
+++Y+P+ N EK P+ + + YR+ E + GF +DD +E
Sbjct: 3 KRRYNPSANEEEKIPIVE--KLYRENQESDFLGGGFCDDDDEVQE 45
>Z81109-12|CAE17917.2| 364|Caenorhabditis elegans Hypothetical
protein R10D12.17 protein.
Length = 364
Score = 27.5 bits (58), Expect = 8.6
Identities = 8/34 (23%), Positives = 19/34 (55%)
Frame = +1
Query: 346 IFTAGNTVYSNGFFLKRTVVVFEAPCNASILVFI 447
++T GN +++ FFL + PC+ +++ +
Sbjct: 188 LYTFGNGIFAKLFFLSNGIFTLILPCSVILIIIV 221
>Z74041-5|CAA98516.2| 354|Caenorhabditis elegans Hypothetical
protein T03F7.2 protein.
Length = 354
Score = 27.5 bits (58), Expect = 8.6
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 407 FSKPHVMLPSSFSSLYLRII*ATGFFSLVLVGLYFCCVFL 526
F P+ MLP + LYL ++ AT F SL L G+ VF+
Sbjct: 58 FKTPNEMLPIKWCMLYLHLL-AT-FSSLCLTGVMMPYVFI 95
>Z72506-4|CAA96619.1| 590|Caenorhabditis elegans Hypothetical
protein F07A5.3 protein.
Length = 590
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +2
Query: 329 SGST*PYLPRVIQSIPMVSSLKEPSSFSKPHVMLP 433
SG+T + R+ ++P++ S PSS + P+VM+P
Sbjct: 464 SGTTLKVVNRLQVNMPVIRSHDVPSSQNMPNVMIP 498
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 478 FLFSCISWAVFLLCV 522
FLFSCI W VF C+
Sbjct: 11 FLFSCIVWTVFSSCL 25
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 478 FLFSCISWAVFLLCV 522
FLFSCI W VF C+
Sbjct: 11 FLFSCIVWTVFSSCL 25
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,686
Number of Sequences: 27780
Number of extensions: 346200
Number of successful extensions: 1079
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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