Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_I05
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.088
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    27   0.20 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    27   0.20 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    27   0.20 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    26   0.27 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.088
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 297 GILCDKNKEEKDQKGFIDYQENKAVLPNGITIDLSAMGKKTKR 169
           GIL + N +  D K    Y   + +L NG+  DLS   K+T+R
Sbjct: 807 GILWNMNNKRLDPKSDSRYTIREEILANGVLSDLSI--KRTER 847


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 439 VFISVFTNNLSD-WFLFSCISWAVFLL 516
           V IS F ++LS  W  F+C+S  +FL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLI 134


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 439 VFISVFTNNLSD-WFLFSCISWAVFLL 516
           V IS F ++LS  W  F+C+S  +FL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLI 134


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 439 VFISVFTNNLSD-WFLFSCISWAVFLL 516
           V IS F ++LS  W  F+C+S  +FL+
Sbjct: 108 VAISFFNDDLSTRWIAFNCLSDTIFLI 134


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 167 HSGHPSIIRFRYCIFILGTIFIV 99
           H  HP   R R C+F+ G +FIV
Sbjct: 169 HVTHP---RHRLCVFVAGVVFIV 188


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 462 IRKYRDENEDGSITWGFEND 403
           +RK  D   DG I WG  +D
Sbjct: 319 LRKITDLGADGFIIWGSSDD 338


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 184 THGREIYCDTIG*DSLIFL 240
           THG +IY  +I  ++++FL
Sbjct: 800 THGYDIYASSIDKENILFL 818


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,871
Number of Sequences: 438
Number of extensions: 4958
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)