Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_I04
(569 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest... 34 0.31
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest... 34 0.31
Y00839-2|CAA68764.1| 749|Homo sapiens 70 kD alpha-glucosidase p... 33 0.54
Y00839-1|CAA68763.1| 952|Homo sapiens glucan 1, 4-alpha-glucosi... 33 0.54
X55080-1|CAC12967.1| 952|Homo sapiens acid alpha-glucosidase pr... 33 0.54
M34424-1|AAA52506.1| 952|Homo sapiens GAA protein. 33 0.54
DQ907243-1|ABI53718.1| 952|Homo sapiens alpha-glucosidase protein. 33 0.54
BC040431-1|AAH40431.1| 952|Homo sapiens glucosidase, alpha; aci... 33 0.54
L19606-1|AAA03539.1| 450|Homo sapiens paired box homeotic prote... 31 2.2
BC001060-1|AAH01060.1| 450|Homo sapiens paired box gene 8 protein. 31 2.2
AC016683-2|AAX88880.1| 450|Homo sapiens unknown protein. 31 2.2
BC031288-1|AAH31288.1| 265|Homo sapiens similar to hypothetical... 31 3.8
BC036099-1|AAH36099.1| 716|Homo sapiens ARNT2 protein protein. 30 5.0
AF185610-1|AAG15310.1| 706|Homo sapiens aryl-hydrocarbon recept... 30 5.0
AB002305-1|BAA20766.2| 716|Homo sapiens KIAA0307 protein. 30 5.0
>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 34.3 bits (75), Expect = 0.31
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 394 PRNLGGNPPAVPVVA--QGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
PR+ GG P P + S+S TSP P S NY Y PT + PTSP
Sbjct: 1602 PRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSP 1774
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1761 SYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP 1795
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP 1802
>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
subunit protein.
Length = 1970
Score = 34.3 bits (75), Expect = 0.31
Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -2
Query: 394 PRNLGGNPPAVPVVA--QGSFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
PR+ GG P P + S+S TSP P S NY Y PT + PTSP
Sbjct: 1602 PRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSP 1655
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1740 SYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSP 1774
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1761 SYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP 1795
Score = 29.9 bits (64), Expect = 6.6
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -2
Query: 343 SFSWTSPEGVPISVNYVADENGYQPTGNAI-PTSP 242
S+S TSP P S NY Y PT + PTSP
Sbjct: 1768 SYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSP 1802
>Y00839-2|CAA68764.1| 749|Homo sapiens 70 kD alpha-glucosidase
protein.
Length = 749
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 279 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 338
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 339 PYVPGVVGGT 348
>Y00839-1|CAA68763.1| 952|Homo sapiens glucan 1,
4-alpha-glucosidase protein.
Length = 952
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 482 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 541
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 542 PYVPGVVGGT 551
>X55080-1|CAC12967.1| 952|Homo sapiens acid alpha-glucosidase
protein.
Length = 952
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 482 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 541
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 542 PYVPGVVGGT 551
>M34424-1|AAA52506.1| 952|Homo sapiens GAA protein.
Length = 952
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 482 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 541
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 542 PYVPGVVGGT 551
>DQ907243-1|ABI53718.1| 952|Homo sapiens alpha-glucosidase protein.
Length = 952
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 482 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 541
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 542 PYVPGVVGGT 551
>BC040431-1|AAH40431.1| 952|Homo sapiens glucosidase, alpha; acid
(Pompe disease, glycogen storage disease type II)
protein.
Length = 952
Score = 33.5 bits (73), Expect = 0.54
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = -2
Query: 550 PISSVAPVRVVPKVSEGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNP 371
P S+ P P + +F +++ DG + E +N I E G P N NP
Sbjct: 482 PGSTAFPDFTNPTALAWWEDMVAEFHDQVPFDGMWIDMNEPSNFIRGSEDGCPNNELENP 541
Query: 370 PAVPVVAQGS 341
P VP V G+
Sbjct: 542 PYVPGVVGGT 551
>L19606-1|AAA03539.1| 450|Homo sapiens paired box homeotic protein
protein.
Length = 450
Score = 31.5 bits (68), Expect = 2.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 460 PDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVADEN 281
P + Y T + + + V L G PP +P QGS++ ++ G+ Y +
Sbjct: 346 PHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAY 405
Query: 280 GYQP 269
G+ P
Sbjct: 406 GHTP 409
>BC001060-1|AAH01060.1| 450|Homo sapiens paired box gene 8 protein.
Length = 450
Score = 31.5 bits (68), Expect = 2.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 460 PDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVADEN 281
P + Y T + + + V L G PP +P QGS++ ++ G+ Y +
Sbjct: 346 PHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAY 405
Query: 280 GYQP 269
G+ P
Sbjct: 406 GHTP 409
>AC016683-2|AAX88880.1| 450|Homo sapiens unknown protein.
Length = 450
Score = 31.5 bits (68), Expect = 2.2
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = -2
Query: 460 PDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQGSFSWTSPEGVPISVNYVADEN 281
P + Y T + + + V L G PP +P QGS++ ++ G+ Y +
Sbjct: 346 PHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAY 405
Query: 280 GYQP 269
G+ P
Sbjct: 406 GHTP 409
>BC031288-1|AAH31288.1| 265|Homo sapiens similar to hypothetical
protein MGC49416 protein.
Length = 265
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 505 EGYGAETVKFGNEINPDGSYTYFYETNNGIAAQEQGVPRNLGGNPPAVPVVAQG 344
+GY AE G+ + DGS T G A+ + PR GG A+ A+G
Sbjct: 26 QGY-AEPEGVGDAVRADGSVTLVLPQTRGPASSHRESPRGSGGAEAALEEAARG 78
>BC036099-1|AAH36099.1| 716|Homo sapiens ARNT2 protein protein.
Length = 716
Score = 30.3 bits (65), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 370 PAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSP 242
P + +Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 582 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 624
>AF185610-1|AAG15310.1| 706|Homo sapiens aryl-hydrocarbon receptor
nuclear translocator 2 protein.
Length = 706
Score = 30.3 bits (65), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 370 PAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSP 242
P + +Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 571 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 613
>AB002305-1|BAA20766.2| 716|Homo sapiens KIAA0307 protein.
Length = 716
Score = 30.3 bits (65), Expect = 5.0
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -2
Query: 370 PAVPVVAQGSFSWTSPEGVPISVNYVADENGYQPTGNAIPTSP 242
P + +Q S + +SP G+ S Y AD + Y P + +SP
Sbjct: 581 PGQQIPSQSSKTQSSPFGIGTSHTYPADPSSYSPLSSPATSSP 623
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,796,882
Number of Sequences: 237096
Number of extensions: 2011105
Number of successful extensions: 11357
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10977
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11349
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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