Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H24
(579 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces po... 49 6e-07
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch... 30 0.21
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 29 0.65
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 1.5
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi... 27 1.5
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 27 1.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 4.6
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 6.1
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 25 6.1
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 25 8.0
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 8.0
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 25 8.0
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 8.0
>SPBC83.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 189
Score = 48.8 bits (111), Expect = 6e-07
Identities = 35/160 (21%), Positives = 68/160 (42%), Gaps = 3/160 (1%)
Frame = -1
Query: 564 LTEEEIGHVIEGRVFPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVV 385
L E G V+ + P N ++ R+ + + V DG+F N+P Y +
Sbjct: 22 LQAEVYGKVLTNTILPKI--NLLSYDTRARLISSNKTFETVVERDGSFTFPNVPDEIYFL 79
Query: 384 EIVHPDYMYEPVRVEINSK---GKYRARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVRE 214
+ DY + + IN Y + +S YP++++ V K Y +
Sbjct: 80 RLESIDYEFSEFHIIINESIVYPYYTSPAEKRPASSTAKNTSYPIKVRAVLKRDYLKEPR 139
Query: 213 QWRLTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLK 94
++ L L +PM+++ + + L+ ILPK+ + + E +
Sbjct: 140 KFSLIRLLKSPMMLLSLASVVLVFILPKLNIEAKALEQAR 179
>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
Exg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 30.3 bits (65), Expect = 0.21
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = -1
Query: 204 LTDFLFNPMVVMMVLPLFLIMILPKMMNDPETKEDLKQISNLAKNI 67
LT F+ + + ++LPL ++I+P +D + K+ + +NL NI
Sbjct: 40 LTFFVSLCVFLSIILPLIFLVIIPHAQSDRKIKDTNMETTNLGVNI 85
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.65
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 329 LELISTRTGSYM*SGCTISTTYEPDGKLCTT 421
LE S RT Y +G + T PDG LC +
Sbjct: 179 LETFSLRTSHYGHTGYVSAVTISPDGSLCAS 209
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 474 VHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMY 358
+H + E+ VREDGT VV + P +V HPD +
Sbjct: 217 IHGDFNEFNIIVREDGTAVVIDFPQ---MVSTSHPDAQF 252
>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 506
Score = 27.5 bits (58), Expect = 1.5
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Frame = -1
Query: 486 LDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPV-RVEINSKGKYRAR 310
+DT + G EY+ D V +L +++VE + +Y+ E + + + KG
Sbjct: 235 IDTLI-AQGKEYLFVSNIDNLGAVVDLNILNHMVE-TNAEYLMELTNKTKADVKGGTLID 292
Query: 309 KVNYVQTSQVIQVP--YPLRMKPVTKFRYFQVREQW 208
V+ ++ QVP + K + KF+YF W
Sbjct: 293 YDGNVRLLEIAQVPPQHVEEFKSIKKFKYFNTNNLW 328
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = -3
Query: 280 HSSTLPAEDETSHQIQIFSSSGTME 206
H+ST+P++DE + I +++GT++
Sbjct: 112 HNSTVPSKDEQAQDISKINTNGTLQ 136
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 2.6
Identities = 14/59 (23%), Positives = 32/59 (54%)
Frame = -1
Query: 468 VNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNYVQ 292
VN + +++ D +++ S +YV++ + P + +P+R +NS G + ++VQ
Sbjct: 1129 VNTKRPVIYMKRDDILGIYS--SIAYVIDSIAPPDVNDPLRAVVNSLGPVSEQDNDFVQ 1185
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 530 AVCFL-LKIPTTAIGNWTPAFTLTEANTSVLSEKM 429
+VCF L IP+T G P F + T VL+E++
Sbjct: 1509 SVCFQSLLIPSTLQGFRNPVFRIMRIMTEVLTEEL 1543
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 25.4 bits (53), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 DIXEPLIEDFSKHFSTF--PAHQIFFARLLICFKSSL 109
D+ PLI FSKHFS H + L C + S+
Sbjct: 1208 DLWNPLILKFSKHFSNLENSFHSLVQKLLSCCTEGSI 1244
>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 398 VHTSSKSYTQ-TTCTNPCVSKSILKANTELE 309
+ + SYT C N SK IL+A TE++
Sbjct: 21 IMVAGSSYTSYQACINSLCSKQILEAETEID 51
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 522 FPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVV 415
FP D N+++ L+ + ++G +Y+ VRE+ +V
Sbjct: 28 FPQIDNNSASESLEYDIPLDGLDYLATVREEARKLV 63
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.0 bits (52), Expect = 8.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +1
Query: 307 FSSSVFAFRIDFDTHGFVHVVWVYDFDD 390
F + FR+DFD H + V +DD
Sbjct: 226 FDKQIETFRLDFDFHSIIGDVGTDYYDD 253
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 25.0 bits (52), Expect = 8.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -1
Query: 522 FPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVV 415
FP D N+++ L+ + ++G +Y+ VRE+ +V
Sbjct: 28 FPQIDNNSASESLEYDIPLDGLDYLATVREEARKLV 63
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.0 bits (52), Expect = 8.0
Identities = 7/23 (30%), Positives = 16/23 (69%)
Frame = +2
Query: 122 FIILGRIMIKNNGSTIITTIGLN 190
++I G +++ NG ++T +G+N
Sbjct: 397 YLISGTTILEGNGKLLVTAVGVN 419
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,651
Number of Sequences: 5004
Number of extensions: 54010
Number of successful extensions: 188
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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