Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H24
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    31   0.88 
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848...    29   3.5  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   6.2  
07_01_0633 - 4735298-4735485,4736083-4736114,4736203-4736297,473...    27   8.2  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    27   8.2  

>04_04_1405 -
           33305948-33309676,33309749-33310468,33310533-33311439,
           33334405-33334484
          Length = 1811

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -1

Query: 477 RVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNY 298
           +V     E   F+RE+    V  L    ++ E+VHP+++  PV V   + GK R   ++Y
Sbjct: 615 KVRRQAPERQAFIREE----VARLLEAGFIREVVHPEWLANPVVVP-KANGKLR-MCIDY 668

Query: 297 VQTSQVI-QVPYPL 259
              ++   + PYPL
Sbjct: 669 TDLNKACPKDPYPL 682


>03_05_0939 -
           28983091-28983747,28983805-28983913,28984245-28984801,
           28985197-28985414,28985508-28985613,28986352-28986429
          Length = 574

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 533 KAVCFLLKIPTTAIGNWTPAFTLT 462
           +++C  L++ TTA+GN+  AF LT
Sbjct: 496 RSLCSALQLVTTALGNYLSAFILT 519


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 331 RIDFDTHGFVHVVWVYDFDDV 393
           ++DFD  GFV V   Y FDD+
Sbjct: 748 KLDFDVSGFVTVTNSYQFDDL 768


>07_01_0633 -
           4735298-4735485,4736083-4736114,4736203-4736297,
           4736414-4736487,4736682-4736817,4736902-4736965,
           4737101-4737166,4737265-4737446,4737824-4737948,
           4738031-4738169,4738250-4738369,4738675-4738746,
           4738900-4738935,4739633-4739749,4739821-4739953,
           4740053-4740156,4740243-4740370,4740880-4741010,
           4741561-4741757,4743906-4744583
          Length = 938

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 351 VRVEINSKGKYRARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVREQWRL 202
           VRVE   +GK    K+  + +  + Q+ + +     T  +YF  R ++RL
Sbjct: 386 VRVETTHQGKSSKYKITTITSEPLSQLNFSMDGTTQTVIQYFSQRYKYRL 435


>02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,
            3366324-3366449,3367056-3367262,3367399-3367492,
            3367575-3367621,3367705-3368157,3368261-3368560,
            3368656-3369114,3369189-3369410,3369659-3369890,
            3370051-3370422,3371210-3371322,3371682-3371903,
            3371977-3372180,3372308-3372572,3373123-3373311,
            3373441-3373768,3373843-3374248,3374339-3374648,
            3375677-3375837,3376825-3376998,3377265-3377609,
            3377713-3377754,3378585-3378734,3378847-3379002,
            3379088-3379540,3379651-3379966,3380402-3380839,
            3381475-3381697,3383538-3383852,3384033-3384095,
            3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 435  EDGTFVVHNLPSGSYVVEIVHP 370
            +DGT + H L  G YV  I HP
Sbjct: 2894 KDGTCIFHTLREGKYVRSIRHP 2915


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,977,544
Number of Sequences: 37544
Number of extensions: 336279
Number of successful extensions: 946
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)