Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H24
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-17|AAK93840.2|  222|Caenorhabditis elegans Hypothetical p...   167   7e-42
AC024788-2|AAF60613.1|  163|Caenorhabditis elegans Hypothetical ...    31   0.45 
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeo...    27   7.3  
AL132862-13|CAB60543.1|  385|Caenorhabditis elegans Hypothetical...    27   9.6  
AF016683-9|AAB66197.1|  299|Caenorhabditis elegans Hypothetical ...    27   9.6  

>U21324-17|AAK93840.2|  222|Caenorhabditis elegans Hypothetical
           protein C35D10.1 protein.
          Length = 222

 Score =  167 bits (405), Expect = 7e-42
 Identities = 72/151 (47%), Positives = 111/151 (73%), Gaps = 1/151 (0%)
 Frame = -1

Query: 537 IEGRVFPPEDPNNSNWQLDTRVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMY 358
           +EG +  P   N + W    R+H+N G+Y+GFVR+D TF V  +P+G+Y+V+I + D+++
Sbjct: 32  VEGEIALPSTRNCAKWSAGARIHLNHGQYMGFVRQDCTFRVDFVPTGTYIVQIENTDFVF 91

Query: 357 EPVRVEINSKGKYRARKVNYVQTSQVIQVPYPLRMKPVTKFRYFQVREQWRLTDFLFNPM 178
           EP+RV+I SKGK RARK+  +Q + V  +PYPLR+      RYF+ RE+WR+TD LF+PM
Sbjct: 92  EPIRVDITSKGKMRARKLTILQPNNVNTLPYPLRLSARGPARYFRKREEWRITDMLFSPM 151

Query: 177 VVMMVLPLFLIMILPKM-MNDPETKEDLKQI 88
           V+M+V+PL +++ILPKM  NDPE K++++ +
Sbjct: 152 VLMLVVPLVVMLILPKMTANDPELKKEMENM 182


>AC024788-2|AAF60613.1|  163|Caenorhabditis elegans Hypothetical
           protein Y46E12A.2 protein.
          Length = 163

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 542 MLSKAVCFLLKIPTTAIGNWT 480
           + S+ VCF +KIP  A+G WT
Sbjct: 9   LFSRHVCFEMKIPVRAVGRWT 29


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -3

Query: 325 QIQS*KSQLRSNFTSHSSTLPAEDETSHQIQIFSSSGTMEAH*LLVQP 182
           Q+Q  +    S+ +S SS+  AE   +HQ+++ S+S ++E++   V P
Sbjct: 217 QVQQHRPAASSSSSSSSSSASAEHHPTHQVRVPSASSSIESNEQRVVP 264


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = -2

Query: 419 WCIIYRLVHTSSK---SYTQTTCTNPC 348
           WCI+   V T +K   + T T C NPC
Sbjct: 727 WCIVQTNVDTFTKCPKNQTMTDCLNPC 753


>Z83106-1|CAB05493.1|  359|Caenorhabditis elegans Hypothetical
           protein F22B8.1 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 44  FSTFPA-HQIFFARLLICFKSSLVSGSFIILGRIMIKNNGSTII 172
           F+T+P  H  F  R ++ F+S+ +S  FI  G I   +   TII
Sbjct: 113 FATYPILHAHFLYRYMVLFRSTFLSSCFIPYGIICSVSYCLTII 156


>U41547-5|AAX88831.1|  272|Caenorhabditis elegans C.elegans homeobox
           protein 60 protein.
          Length = 272

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 187 EQEVSEPPLFPNLKISEFGDWFHPQRVR 270
           +QE +E     N+KIS+  +WF  QR+R
Sbjct: 169 DQEKAELAKQCNIKISQVNNWFGNQRIR 196


>AL132862-13|CAB60543.1|  385|Caenorhabditis elegans Hypothetical
           protein Y73F8A.18 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 47  STFPAHQIFFARLLICFKSSLVSGSFIILGRIMIKNNGSTIITTIGLNKKSVSL 208
           STF   +    RL+I   +   S SF+  G   I+  G+ ++TTIG N +   L
Sbjct: 72  STFSKMKNLIGRLIIV-NTQFKSASFLA-GLESIECGGTDLVTTIGFNDEMTEL 123


>AF016683-9|AAB66197.1|  299|Caenorhabditis elegans Hypothetical
           protein K09F6.7 protein.
          Length = 299

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 375 HPDYMYEPVRVE--INSKGKYRARK 307
           HPDY+ E V VE   +  GKY  RK
Sbjct: 97  HPDYLVETVCVEEDCSESGKYMCRK 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,818,166
Number of Sequences: 27780
Number of extensions: 301559
Number of successful extensions: 930
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)