Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H24
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.54 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   6.7  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   6.7  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 180 MVVMMVLPLFLIMILPKMMNDPETKEDL 97
           +V + VLP FL++  PK   D E +E++
Sbjct: 339 VVFIQVLPRFLLIERPKKDEDEEEEEEV 366


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 240 KFRYFQVREQWRLTDFLF 187
           K   FQV+ QW+  D+ F
Sbjct: 28  KANIFQVKYQWKYFDYNF 45


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 344 SKSILKANTELEKSITFKLHK 282
           SKS +KAN++ E S + KL +
Sbjct: 561 SKSFIKANSQTEVSNSKKLDR 581


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 502 VGIFRRKHTAFDNMSDF 552
           +G+ R+K T FD+  D+
Sbjct: 212 IGLQRKKDTTFDDYLDY 228


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 502 VGIFRRKHTAFDNMSDF 552
           +G+ R+K T FD+  D+
Sbjct: 212 IGLQRKKDTTFDDYLDY 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,055
Number of Sequences: 438
Number of extensions: 3530
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)