Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H22
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 1.4
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 27 1.4
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 27 1.8
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 2.4
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 25 4.2
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 25 4.2
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 25 4.2
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 4.2
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 25 5.6
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 25 5.6
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|... 25 5.6
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.6
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 24 9.7
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 9.7
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 24 9.7
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 226 LAIPLTRQAAHALPMSVEMFLFNLI 300
+AI L A H LPM V FL++L+
Sbjct: 392 VAIHLVLDAVHKLPMQVYFFLYSLM 416
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = -3
Query: 368 IYFKKYSRNCHTRPKQH----NRYIYCIKLNKNISTDMGNAC 255
IYFKKY +C H I +KLN+NI D G+ C
Sbjct: 504 IYFKKYDADCLPMTFIHIATSAARIILVKLNENIPED-GDVC 544
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.6 bits (56), Expect = 1.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -2
Query: 249 LSCQWDS*SRSMDWKRFMVINSTWIQDC 166
L C + + S++ WK V+ WI DC
Sbjct: 106 LVCSFLTPSKARQWKHQKVVKPEWIVDC 133
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 2.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -3
Query: 383 YNSECIYFKKYSRNCHTRPKQHNRYIYCIKLNKNI 279
+N + + +Y+++C R K+ +YC+K K++
Sbjct: 75 WNWQNLGISRYTKDCDFRSKKQKTIMYCLKGLKHL 109
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 147 VWLLQLCHSLGMSQLPVLLHKLP 79
V L+ LCH L + Q+P+ +LP
Sbjct: 543 VVLVALCHMLKIHQIPIAKRELP 565
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 4.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 290 NKNISTDMGNACAACLVN 237
NK+I DMGN CA+ L +
Sbjct: 103 NKSIEIDMGNQCASGLAD 120
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +1
Query: 160 TPTVLNPSRVNNHKPFPVHRTTLAIPLTRQAAHALPMSVEMFL 288
+PT++ S V +H P + T I T ++H+ P+ + +
Sbjct: 459 SPTLVESSTVVHHDPSYLQNQTSEINDTNHSSHSSPLDLNRMI 501
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 69 IILEVACAIVLAAETFPVNDIAAAARLPXCHPNSLESK 182
I L C ++++ FP++ A + C S+ESK
Sbjct: 3441 IFLRNKCEPIISSFGFPISKSAVRTNIERCVQTSIESK 3478
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 25.0 bits (52), Expect = 5.6
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = +3
Query: 282 VLVQLNTVDIAVVLFRSCVTIPGIFLKIYTFTIVLNKFHS--HLTVTLRSGWI 434
V+ V + V+ CV + +FL I + ++S L VT+ W+
Sbjct: 155 VIFLAQCVKVTVIFLAQCVKVTAVFLAKCVKVIAVGLYNSKKDLVVTIWLAWV 207
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 142 PDSLXATPTVLNPSRVNNHKPFP 210
PDSL +TPT PS ++ PFP
Sbjct: 98 PDSLVSTPTA--PSANHHGNPFP 118
>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
Cut9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 394 NLFNTIVNVYILRNIPGIVTQDLNNTTAIS 305
N+ I VY+ + IPG+ L+ + AIS
Sbjct: 551 NVHTAIALVYLHKKIPGLAITHLHESLAIS 580
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 210 WKRFMVINSTWIQDCWGGXQGVWLLQL 130
W + N+T I+DCW G V L L
Sbjct: 173 WIDYGSNNNTDIEDCWTGDDNVILADL 199
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 24.2 bits (50), Expect = 9.7
Identities = 15/64 (23%), Positives = 27/64 (42%)
Frame = -3
Query: 416 SHSQMRMEFI*YNSECIYFKKYSRNCHTRPKQHNRYIYCIKLNKNISTDMGNACAACLVN 237
S+ + +E++ N I F+ Y +N H Y K K ++ + N ++N
Sbjct: 404 SNIEAFLEYLRSNDLSINFQFYPKNVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLN 463
Query: 236 GIAK 225
G K
Sbjct: 464 GNGK 467
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 24.2 bits (50), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 133 LQQPDSLXATPTVLNPSRVNNHKPFPVHRTTLAIP 237
+Q P S ++ T +PS N PFP ++LA P
Sbjct: 64 IQIPKS--SSSTAFSPSNNNAPSPFPPKNSSLASP 96
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.2 bits (50), Expect = 9.7
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -3
Query: 338 HTRPKQHNRYIYCIKLNKNIS-TDMGNAC 255
H +PK H + C KL++++ D + C
Sbjct: 199 HLKPKDHELWFTCAKLSESLEFWDQADYC 227
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,942,999
Number of Sequences: 5004
Number of extensions: 37397
Number of successful extensions: 89
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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