Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H21
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0177 + 1424773-1424850,1425307-1425391,1425498-1425577,142...    29   1.5  
04_03_0774 - 19457218-19457517,19457575-19457673,19457679-194577...    27   8.1  

>03_01_0177 +
           1424773-1424850,1425307-1425391,1425498-1425577,
           1425771-1425898,1425962-1426049,1426187-1426277,
           1426712-1426881,1427151-1427438,1427527-1427643,
           1427924-1427976,1428029-1428090,1429042-1429118,
           1429269-1429322,1429417-1429476,1429581-1429658,
           1429805-1429851,1429933-1430051,1430280-1430364,
           1430443-1430557,1430662-1430784,1430869-1430969,
           1431346-1431475
          Length = 742

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 88  DGSDYWRH-LGIASGNFTGLFTTKGKSQAAHSTTN 189
           D  ++W H  G  SG F G  + K KS A   T+N
Sbjct: 188 DDVNWWGHKFGFKSGGFLGAKSRKNKSSATKGTSN 222


>04_03_0774 -
           19457218-19457517,19457575-19457673,19457679-19457726,
           19458382-19458482,19458807-19458918,19459132-19459515,
           19459952-19460128
          Length = 406

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 334 NELHILLMFIYTVYDPHGARAY 399
           NE+HI   + ++V +PH ARA+
Sbjct: 361 NEIHISFYYAHSVANPHIARAF 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,430,842
Number of Sequences: 37544
Number of extensions: 181217
Number of successful extensions: 377
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)