Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H21
         (490 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   1.00 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   3.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.8 bits (49), Expect = 1.00
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 218 ANSFLFINHVFVVE*AACDFPFVVNSPV 135
           A S    +++FVV  A CDF  ++ +P+
Sbjct: 76  AKSLRTPSNMFVVNLAICDFFMMIKTPI 103


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 132 VSGGDPEMAPVVTAI*RCSA 73
           + G D E+A V+ A+ RC+A
Sbjct: 347 IFGSDQEVAGVMRAVKRCNA 366


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 114 RDRLRKLHRTIYNEGKITSSSFYYKYMIYKKK 209
           R + RK+  ++ N     ++++ Y Y  Y KK
Sbjct: 308 RSKERKIISSLSNNYNYNNNNYKYNYNNYNKK 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,906
Number of Sequences: 438
Number of extensions: 2089
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)