Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H18
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   172   3e-44
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  172 bits (419), Expect = 3e-44
 Identities = 88/182 (48%), Positives = 116/182 (63%), Gaps = 1/182 (0%)
 Frame = -1

Query: 649 KETFGCLGIIYAILAXGLLGFIV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*L 470
           K  FG  G+++A+L+  LLG +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  L
Sbjct: 271 KPIFGKEGMLWAMLSIALLGLMVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWL 330

Query: 469 ATIHGTQINYN-PXIL*RLGFVFLFTVGGLTGVILANSSIDITXHDTYYVVAHFHYVLSX 293
           AT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS 
Sbjct: 331 ATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSM 390

Query: 292 XXXXXXXXXXIN*YPXFTGLSLNSYILKXXXXXXXXXXXXXXFPQHFLGXAGIPRRYSDY 113
                         P   GL  N  +                 PQHFLG  G+PRR  DY
Sbjct: 391 GALFGLCGAYY-WSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHFLGLNGMPRRIPDY 449

Query: 112 PD 107
           P+
Sbjct: 450 PE 451


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 638  WLFRNNLCYTSXWVIRIHCLSSSYIH 561
            WLF NN+  ++ W  ++    S+++H
Sbjct: 3959 WLFINNIHLSTPWAEKLPSKMSNHLH 3984


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,658
Number of Sequences: 5004
Number of extensions: 24024
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)