Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H15
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    30   0.27 
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    28   1.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   5.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    26   5.7  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    25   7.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.6  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    25   10.0 
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   10.0 

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +3

Query: 405 GSQWSMFLLNSFYFEELDLALSSRKNTTPGLDDIPYIMLQNLHVSD*YEKVFVI 566
           G +W   LL S Y + L L+ S+R+N + G D I Y+ +    +SD    +F+I
Sbjct: 321 GMRWKTELLASIYRKSLLLSSSARQNRSIG-DIINYMAVDTQKISDLPIYLFII 373


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +1

Query: 409 VSGACFYLTLFILKNLTWLCLQERIQPLVLTIFLILCFKICTFLT 543
           +  + FY+T FIL  +    L +++QP  +  F+++ + + T  T
Sbjct: 98  IIASVFYVT-FILFEMPTTLLMKKVQPKRMLAFIVISYSLTTIFT 141


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 327 IESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLL 431
           I ++ + LA+ +NN  N   +F+ N     S+FLL
Sbjct: 671 INAYAKLLAKDANNKTNFQAIFDNNPKFLDSLFLL 705


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 372 DNISGLFEFNDGSQWSMFLLNSFYFEELDLA 464
           +NI  +FE+ D S     L+  ++F EL++A
Sbjct: 456 NNIWSVFEYKDPSTKLSALIPKYFFSELNIA 486


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 275 SNKIPHSGYWSESIKR*TKTFPTVFLSQFDNNFF 174
           SNK+  S +++ S +   KTF  V +S  DN F+
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEIS--DNEFY 363


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 551 KSVCYQVLLQFVFSLMCRGHMIM 619
           K+V  Q L +  F L+CR HM++
Sbjct: 413 KNVIRQFLAKHDFDLICRAHMVV 435


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 309  SKNDEWIESFLEKLAQPSNNNDNISGLFEFNDGSQWSMFLLNSFYFE 449
            +KN+      + KL   +  ND+    F F+  +  ++ +LN F FE
Sbjct: 903  AKNEPTAAKPISKLEDDALFNDSAGNAFGFSSKTDSNVEMLNDFDFE 949


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +3

Query: 57  PWWNXTCAEAVTKSXEALANYRRNMTMDNYI 149
           PWW    A   +   E     +RN  MDN I
Sbjct: 75  PWWPARVASQKSIPTEVRERLKRNFRMDNGI 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,440,764
Number of Sequences: 5004
Number of extensions: 46751
Number of successful extensions: 127
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)