Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H15
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1451 + 33695734-33695806,33695946-33696179,33696341-336964...    29   3.4  
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794...    29   4.5  
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701...    29   4.5  

>04_04_1451 +
           33695734-33695806,33695946-33696179,33696341-33696434,
           33696532-33696749,33696859-33696992,33697098-33697325,
           33697417-33697845
          Length = 469

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +1

Query: 388 YLNLMTEVSGACFYLTLFILKNLTWLCLQERIQP-----LVLTIFLILCFKICTF 537
           Y N +  V GA  +  L I   +   C+Q RI P       L  F ++CF + TF
Sbjct: 400 YFNEVLGVLGALVFWPLAIYLPVEMYCVQRRISPWTPRWAALQAFSVVCFVVGTF 454


>01_06_0854 -
           32477994-32478161,32478689-32478826,32479225-32479440,
           32479580-32479656,32481144-32481555,32482248-32482850,
           32482954-32483229
          Length = 629

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 VGKVFVHLLIDSLQYPECGILLEDLRE 288
           V  + V+L +D  Q+P+C  LL+D  E
Sbjct: 584 VNTMMVNLAVDEAQFPDCHELLDDFSE 610


>01_06_0853 -
           32468690-32468857,32469398-32469535,32469930-32470145,
           32470280-32470356,32470483-32470549,32471264-32471866,
           32471971-32472258
          Length = 518

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 208 VGKVFVHLLIDSLQYPECGILLEDLRE 288
           V  + V+L +D  Q+P+C  LL+D  E
Sbjct: 473 VNTMMVNLAVDEAQFPDCHELLDDFSE 499


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,516,006
Number of Sequences: 37544
Number of extensions: 248204
Number of successful extensions: 595
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)