Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H14
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 29 0.61
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ... 28 1.1
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.1
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 27 1.9
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 26 4.3
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.7
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 26 5.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 25 7.5
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 25 9.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 9.9
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 25 9.9
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 29.1 bits (62), Expect = 0.61
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 341 GKCQNAEGFCGGTDYAGTCGGNTALRDCERSSSTRESKLAR 219
G C +GFC GT + +C G AL + RS + +S+ R
Sbjct: 68 GTCAG-DGFCNGTGGSASCTGCPALNNRIRSLNASKSQSGR 107
>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 634
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +2
Query: 368 DGATAEYKDAHHLGAHPARQTSAQLSAEAKRHDKLVRGDSS*QKQHLSSIFLKTNSQTFQ 547
D T EYK H + T+A+ S E K H K ++ S ++ LS ++ ++TF
Sbjct: 506 DEDTLEYKQLHPSRSEARGLTAAEESEEEKEHTKGIKFSS--DEESLSD--MEEENETFD 561
Query: 548 *AVNEESA*QSYCS**TPIARSRMT 622
V+ Q + TP R T
Sbjct: 562 ALVDRRKTEQQVSNEKTPQETIRST 586
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 415 MCAQMVCILIFSGGSVAGIGMGAALENVR---TLKDSVAVPIMQALAAGTLLYVTVSEVL 245
+ A + I+I + S+ G G A + T+ D + + AAG++L+ +SEV
Sbjct: 112 LVASFIAIVITANSSIFSDGGGIAAQQYHVGATVGDLCSATFLLGFAAGSVLFAPLSEVY 171
Query: 244 PR 239
R
Sbjct: 172 GR 173
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 27.5 bits (58), Expect = 1.9
Identities = 18/68 (26%), Positives = 27/68 (39%)
Frame = +2
Query: 275 CSRRKCLHNRYRHRILQRSDIFQGCSHADSGDGATAEYKDAHHLGAHPARQTSAQLSAEA 454
C LH H ++ +D+FQ CS D ++ A R+TS
Sbjct: 105 CMAAIALHMTEWHNVI--ADVFQACSSKDPSGRCVLQFLSVLPEEASDPRKTSLSWEELC 162
Query: 455 KRHDKLVR 478
R D+L+R
Sbjct: 163 IRVDELLR 170
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 661 CPGEVDNPQMCHVSHTAPCNRSSS 590
C G +D PQ C V +T+P S S
Sbjct: 63 CSGSMDAPQPCAVLYTSPSPSSIS 86
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 417 GCAPKWCASLYSA 379
GC P WC SL SA
Sbjct: 1212 GCLPSWCISLTSA 1224
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = -1
Query: 383 QRWLRRRNRHGSSLGKCQNAEGFCGGTDYAGTCG 282
+ W RRR RH + G N EG T CG
Sbjct: 918 KNWERRRARHAAKEGINLNGEGRKPTTRKCSNCG 951
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.5
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +3
Query: 120 NQPS*SRNTVHKYIAAKPTATAVNCAIPAVLLRSCQFALSRGRTSLT---VT*SSVPAAS 290
+QPS S + + +A PT+T+ + + ++ S S ++LT ++ SS+P+ S
Sbjct: 185 SQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTS 244
Query: 291 ACIIGTATESFSVLTFSKAA 350
+ T++ S + S A+
Sbjct: 245 SSSSSTSSSLSSSSSSSTAS 264
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 371 RRRNRHGSSLGKCQNAEGFCGGTDYAGTCGGNTALRDCERSSSTRESKLARAQEHRW 201
+RRNR G+ + ++ + +DY+ + RD E ESK A RW
Sbjct: 225 KRRNRFGNGSRRDVDSSKYSHDSDYSYGAHSSWDARDVEYPEEDPESK---ADRQRW 278
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 565 ERITILLFLMNSYCTEPYDSRGTFEGYPP 651
+R+ L++ N+YC++ Y R + Y P
Sbjct: 7 KRLRAPLYIQNAYCSKNYFYRSFIQYYSP 35
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 330 LTFSKAAPMPIPATEPPLNIRMHT 401
L + A P+P+P+T PP+ I T
Sbjct: 1026 LPSADAPPIPVPSTAPPVPIPTST 1049
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +3
Query: 294 CIIGTATESFSVLTFSKAAPMPIPATEPPLNIRMHTI 404
C I TA ++ S P PIP+ PP + + I
Sbjct: 250 CPISTAPPVLNIGDRSLETPPPIPSPRPPQPVAVEAI 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,403
Number of Sequences: 5004
Number of extensions: 57761
Number of successful extensions: 163
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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