Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H14
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.87 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   1.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.0  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 270 SSVPAASACIIGTATESFSVLTFSKAAPMPIPATEPP 380
           +++PAASA   G AT S  V T +  A M    T  P
Sbjct: 226 TTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIP 262



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 350  SHADSGDGATAEYKDAHH-LGAHPARQTSAQLSAEAKRHDKLVRGDSS*QKQHLSSIFLK 526
            S + +GD +   ++  HH    HP  Q  AQ   + ++  +  +     Q+Q        
Sbjct: 799  SKSVNGDQSQPPHQQLHHHQSTHPQAQAQAQPQQQQQQQQQQPQQQQQQQQQQQQQQRGP 858

Query: 527  TNSQTFQ*AVNEESA 571
              +  F   + EE++
Sbjct: 859  MTNDDFNPNIEEEAS 873


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 363 PATEPPLNIRMHTIWAHIRPGRLAHSSAPRQ 455
           P  E  ++ +MHT   H++P +  H S  +Q
Sbjct: 162 PLVESQMHHQMHTQHPHMQPQQGQHQSQAQQ 192


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 568 RITILLFLMNSYCTEPYDSRG 630
           RI +L FL+ S CT P  SRG
Sbjct: 4   RILLLFFLLLSSCTRP--SRG 22


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 568 RITILLFLMNSYCTEPYDSRG 630
           RI +L FL+ S CT P  SRG
Sbjct: 4   RILLLFFLLLSSCTRP--SRG 22


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = -3

Query: 372 PSPESAWEQPWKMSER 325
           PSP++ W + WK+  +
Sbjct: 204 PSPKTPWYKGWKVERK 219


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2
          protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 69 HFFMKTLRLRCNPS 28
          H+F K LRL  NPS
Sbjct: 25 HWFRKGLRLHDNPS 38


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 610 EPYDSRGTFEGYPP 651
           EPY+ RGT    PP
Sbjct: 893 EPYNQRGTVVSPPP 906


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 610 EPYDSRGTFEGYPP 651
           EPY+ RGT    PP
Sbjct: 931 EPYNQRGTVVSPPP 944


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,643
Number of Sequences: 438
Number of extensions: 3855
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)