Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H13
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 71 6e-13
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 71 6e-13
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 71 6e-13
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 71 6e-13
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 69 2e-12
Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical pr... 28 5.4
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 27 9.4
U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase ... 27 9.4
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/59 (57%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Frame = -2
Query: 567 QXQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 397
Q Q+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 582 QKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/59 (57%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Frame = -2
Query: 567 QXQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 397
Q Q+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 522 QKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 580
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/59 (57%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Frame = -2
Query: 567 QXQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 397
Q Q+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 519 QKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 577
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 70.9 bits (166), Expect = 6e-13
Identities = 34/59 (57%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Frame = -2
Query: 567 QXQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 397
Q Q+LGER++ LI++++P AGKITGM+LEIDNSEL+ ML+ +E ++KVDEA +VL
Sbjct: 582 QKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVL 640
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 69.3 bits (162), Expect = 2e-12
Identities = 34/59 (57%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Frame = -2
Query: 567 QXQMLGERLFPLIQRMHPDL--AGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVL 397
Q Q+LGER++ LI++M P+ AGKITGM+LEIDN+EL+ ML+ AE ++KV+EA VL
Sbjct: 617 QKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVL 675
>Z81519-5|CAI46603.1| 590|Caenorhabditis elegans Hypothetical
protein F29C12.1b protein.
Length = 590
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 453 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 554
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 338 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 371
>Z81519-4|CAB04218.1| 592|Caenorhabditis elegans Hypothetical
protein F29C12.1a protein.
Length = 592
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 453 YEEVLNYQFPKAYQLFSQPNQGAFSE*VETVVPQ 554
Y + N QF YQ F QP Q +++ + PQ
Sbjct: 340 YNQQYNQQFNPPYQQFQQPQQQQYNQQQQQQTPQ 373
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 525 RMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 409
R++ D AG++ LL ++N +L H + LK DEA
Sbjct: 619 RIYTD-AGRVCRPLLIVENQKLALKKRHIDQLKEAADEA 656
>U10333-1|AAA50224.1| 859|Caenorhabditis elegans RNA polymerase II,
second largestsubunit protein.
Length = 859
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 525 RMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEA 409
R++ D AG++ LL ++N +L H + LK DEA
Sbjct: 420 RIYTD-AGRVCRPLLIVENQKLALKKRHIDQLKEAADEA 457
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,713,473
Number of Sequences: 27780
Number of extensions: 140998
Number of successful extensions: 368
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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