Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H10
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0451 - 19179592-19179648,19179745-19179879,19180214-191802...    29   3.5  
09_04_0020 + 13837257-13837281,13837364-13837550,13837655-138377...    29   4.7  
01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355     28   6.2  

>12_02_0451 -
           19179592-19179648,19179745-19179879,19180214-19180247,
           19180347-19180423,19180523-19180598,19180792-19180925,
           19181772-19181878,19182505-19182808,19182913-19183218
          Length = 409

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 239 FCSDFL*TAQAK--NHQMENIFPYFSYINLNELFCVCGLKTLQYIT 108
           F   FL  AQA   NH +E+   Y SY + +   CVC L+ LQ+ T
Sbjct: 333 FLRRFLRAAQASRNNHTLEH---YTSYKSSDIQICVCALRELQHNT 375


>09_04_0020 +
           13837257-13837281,13837364-13837550,13837655-13837727,
           13837769-13837804,13838161-13838281,13838399-13838472,
           13838594-13838730,13839262-13839325,13839693-13839758,
           13840061-13840130,13840206-13840310,13840840-13840981,
           13841343-13841439,13841939-13842460
          Length = 572

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 345 MTIHINMYYNTIIGFTKNKI 286
           +TI  NMYY  +IG+T  KI
Sbjct: 286 LTIQANMYYKMLIGWTSQKI 305


>01_06_0871 - 32604968-32605470,32605546-32605722,32605821-32606355
          Length = 404

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 44  GYLTILRYTAGGAHGITLDVTK*CIAKF*GRTRKIIHLN 160
           GY  +L Y   G HG ++ +T+   A +  R R ++HL+
Sbjct: 62  GYPPVLAYYISGGHGDSVRMTRLLKAVYHPRNRYLLHLD 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,229,035
Number of Sequences: 37544
Number of extensions: 289064
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)