Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H10
         (699 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78542-9|CAB01742.2|  405|Caenorhabditis elegans Hypothetical pr...    31   0.79 
U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeo...    30   1.4  
U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.       30   1.4  
Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z78542-9|CAB01742.2|  405|Caenorhabditis elegans Hypothetical
           protein F20D1.8 protein.
          Length = 405

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = +1

Query: 325 HIYMYGHTASPPCMSENKFEKRRECNI*ISKSVAS*I*YNKNLYLSIYY*TTQIIVSSHV 504
           H+Y+ GH +   C ++   E   + N+ +S S    I    +    I   T  II+S H 
Sbjct: 52  HVYVKGHYSMKHCRTDATLES--QVNLTVSYSACDVIRQRSSNPKGIMM-TATIIISFHP 108

Query: 505 MFVT*HNSKYK 537
           MF+T  +  YK
Sbjct: 109 MFITKIDKSYK 119


>U40935-7|AAA81691.3|  338|Caenorhabditis elegans C.elegans homeobox
           protein 20 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 319 IVHIYMYGHTASPPCMSENKFEKRRECNI*ISK 417
           +++ Y YGH ++P    E K +  R+CNI +S+
Sbjct: 202 VLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQ 234


>U01303-1|AAC46471.1|  338|Caenorhabditis elegans Ceh-20 protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +1

Query: 319 IVHIYMYGHTASPPCMSENKFEKRRECNI*ISK 417
           +++ Y YGH ++P    E K +  R+CNI +S+
Sbjct: 202 VLNEYFYGHLSNPYPSEEAKEDLARQCNITVSQ 234


>Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.6 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 659 DIIGYVTI*IIVRLEASNSCDVTRW*ADCDLV*PCFCPKVF 537
           D IGY+   + VR+ ++   DV+R+  D      CFC  +F
Sbjct: 157 DDIGYIQDYLSVRVSSNCPMDVSRFPFDSQTCQICFCLPIF 197


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,109,141
Number of Sequences: 27780
Number of extensions: 303639
Number of successful extensions: 621
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)