Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H09
(590 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 30 0.22
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 30 0.29
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 29 0.38
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 0.89
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 27 1.5
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 1.5
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos... 27 2.0
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 2.0
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 2.0
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.7
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos... 27 2.7
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 2.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.7
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 3.6
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 26 3.6
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 3.6
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 3.6
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 26 4.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 4.7
SPBC21B10.13c |||transcription factor, homeobox type |Schizosacc... 26 4.7
SPCC1442.15c |cox18||mitochondrial inner membrane protein Cox18|... 25 6.2
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 25 8.3
SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ... 25 8.3
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 25 8.3
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 25 8.3
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 30.3 bits (65), Expect = 0.22
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -2
Query: 580 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRRTVNV 401
KK++K K K+ KD+ K++ G+ D ++ K + K + +P V
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSD----KEEKKKKKIKLKDKPESTSSVEKV 245
Query: 400 TEELRPV-LHAPSARDF 353
E RP +H + R F
Sbjct: 246 KEGNRPASIHFHTRRKF 262
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Frame = -2
Query: 580 KKIDKKRK--ANKERKNSKDETEIRDKKRK 497
KK +K+RK A KE+K K++ E ++KK+K
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/49 (22%), Positives = 29/49 (59%)
Frame = -2
Query: 568 KKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAE 422
KKRK+ + + +DE +++KR+ + ++ ++ K + +K + + +E
Sbjct: 426 KKRKSVESSEKDEDEAAKKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 29.5 bits (63), Expect = 0.38
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRR 413
+K+ K + E ++ +DE +I +K++K D+ D+ R + A+KRR
Sbjct: 31 RKRPRTKEEGYYESESEEDEDQILNKEKKEGQSEDMFSDTSEDEKRTLPNDEAQKRR 87
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 0.89
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKAR----GEPAEKR 416
QK+ +K+++ +E+K K + E +K +R+ E+ + + RK R E E+R
Sbjct: 660 QKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEERR 719
Query: 415 R 413
R
Sbjct: 720 R 720
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = -2
Query: 571 DKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRRTVNVTEE 392
+ KRK +E K +++ + RDKK++ + K E+ + + + + A+K EE
Sbjct: 579 ENKRKQERELKKIREKEKKRDKKKQ--LKLAKEEERQRREAERLAEQAAQKALEAKRQEE 636
Query: 391 LR 386
R
Sbjct: 637 AR 638
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 329 PTVKCPTPEVPGAGRVQDGPQLLSDIY 409
PT K PT E P G V+ + L +IY
Sbjct: 374 PTTKAPTSEAPPKGHVKQLAKQLGNIY 400
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/76 (25%), Positives = 40/76 (52%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRRTVN 404
++K+ KK++ K++ ++ ++T + D E+ + +G++A G KR+ N
Sbjct: 190 REKLRKKQQQAKKKGSTGEDTLASSEVSSEVDISTPAENDSSAKGKQAAGS---KRKGPN 246
Query: 403 VTEELRPVLHAPSARD 356
VT L+ +L AR+
Sbjct: 247 VT-ALQKMLEEKRARE 261
>SPAC15A10.13 |ppk3||serine/threonine protein kinase
Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 637
Score = 27.1 bits (57), Expect = 2.0
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -2
Query: 574 IDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTD 455
ID K K + E KN D TEI++KK + V TE+SK +
Sbjct: 565 IDMK-KESLELKN--DTTEIKEKKNSKSRVVGNTENSKDE 601
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = -2
Query: 565 KRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRK 443
++ + KE+K+ K++ + + KK++ DD +E+ K + +K
Sbjct: 456 EKPSKKEKKDKKEKKKEKSKKKRSADDA--SEEVKKSKKKK 494
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 27.1 bits (57), Expect = 2.0
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEI-RDKKRKGTDDVRKTEDSKTDQGRKARG-EPAEKRRT 410
+KK+ K+R A +ER K+ + R+K+R+ + +K + + +K + E EK R
Sbjct: 77 EKKLQKQR-AQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKER- 134
Query: 409 VNVTEELR 386
+ + E+ R
Sbjct: 135 IRLQEQQR 142
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 26.6 bits (56), Expect = 2.7
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = -2
Query: 580 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDVR-KTEDSKTDQGRKARGE 431
+K KK RK T IRD K DD + +TEDS R+ E
Sbjct: 444 QKTRKKNLKENIRKQRTTSTAIRDIAIKFLDDAKCETEDSTNLTNREGEAE 494
>SPAC222.06 |mak16||nuclear HMG-like acidic protein
Mak16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -2
Query: 559 KANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKA 440
++ +E + + E D+ KG RKT+D+K + ++A
Sbjct: 240 ESEEEESSESESDEDEDEDNKGKIRKRKTDDAKKSRKKRA 279
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -2
Query: 574 IDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRR 413
I+KK+K + + K + E+ ++KK K +K + SK GE +K++
Sbjct: 451 IEKKKKKSSKLKEADGESSKKEKKEKKD---KKHKKSKRKSEESEDGESPKKKK 501
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 2.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRK 443
Q D+K + + + ++ ++RK T+DV D K ++ RK
Sbjct: 227 QFSFDEKEREEQLLSLKEIHAKVTQQQRKNTEDVLTLRDKKLEERRK 273
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +2
Query: 302 AGLLVLQGLPTVKCPTPEVPGAGRV 376
AG+ L G P PTP PG G V
Sbjct: 98 AGMQTLPGRPASNGPTPPNPGNGNV 122
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 3.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 565 KRKANKERKNSKDETEIRDKKRKG 494
++K K K KD+ E +KK+KG
Sbjct: 58 EKKDKKPEKRKKDQKEASEKKKKG 81
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.6
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = -2
Query: 580 KKIDKKRKANKERKNSKDETEIRDKKRK 497
K+++K + N ++KN K ++R +K+K
Sbjct: 28 KELEKILERNNKQKNKKSRNQVRREKKK 55
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Frame = -2
Query: 586 IQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQ 452
I +K+ R + E+K+S+ ++E+ K T+D T + ++
Sbjct: 331 IAEKVSDIRLGDGEKKSSETDSEVAATKTPATEDAPATNAGEAEE 375
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRR 413
+K + K RKA K K+ E ++ +K + K D+K GRK GE E+ +
Sbjct: 47 KKLMRKLRKAGKIDKDGNWTPEALEEAKKKEEKRLKRLDAK--YGRKEEGESQEESK 101
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSK----DETEIRDKKRKGTDDVRK 476
+KK +KK K +K +K SK D++ + +KRK D K
Sbjct: 145 KKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESK 184
>SPBC21B10.13c |||transcription factor, homeobox type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 556 ANKERKNSKDETEIRDKKRKGTDDVRKT 473
+N E KN +DE + K+R+ T D T
Sbjct: 19 SNNEAKNHEDEETHQKKRRRRTTDAEAT 46
>SPCC1442.15c |cox18||mitochondrial inner membrane protein
Cox18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -1
Query: 254 IREAKTLYPFLSKLR-GRRSMKFLTLIKNIEKECRTYFFLLCIKNTLYQQ 108
+R TL ++ L+ RR ++ LIK +K CRT ++ LY++
Sbjct: 25 LRSTITLPIAIASLKTARRFVQVQPLIKEAKKRCRTNTDFRTVRKKLYKR 74
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 568 KKRKANKERKNSKDETEIRDKKRKGTDDVRK 476
KK K NK+ K KD+ + +DKK K + K
Sbjct: 245 KKEKQNKKEK--KDKKDKKDKKEKAPKEPPK 273
>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 63
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = -2
Query: 583 QKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRK 443
+ + KK++A K + + EI K++ D+ + E + +G+K
Sbjct: 17 KSQASKKKQAGDPTKRLEAQAEIMRAKQRAADERKAAEANGGSKGKK 63
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/33 (27%), Positives = 23/33 (69%)
Frame = -2
Query: 580 KKIDKKRKANKERKNSKDETEIRDKKRKGTDDV 482
KK++K+R+ ++RK ++ E +KK++ +++
Sbjct: 38 KKLEKEREKEQKRK-EREAREAEEKKKREANEI 69
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/76 (21%), Positives = 31/76 (40%)
Frame = -2
Query: 586 IQKKIDKKRKANKERKNSKDETEIRDKKRKGTDDVRKTEDSKTDQGRKARGEPAEKRRTV 407
+Q+ I+KKR A K+ + + + D +DS + + R+
Sbjct: 145 LQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIR 204
Query: 406 NVTEELRPVLHAPSAR 359
N +++ LH +AR
Sbjct: 205 NASKKALLELHRNTAR 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,259,206
Number of Sequences: 5004
Number of extensions: 46531
Number of successful extensions: 231
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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