Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H09
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.97 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   1.7  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   1.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   1.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   3.9  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   3.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.9  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   3.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   3.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.97
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -3

Query: 402 SLRSCGPSCTRPAPGTSGVGHLTVGRPCRTSSPAAAMMRYTAS 274
           ++ + G + T PA   +G G  T      TS+  AAM   T +
Sbjct: 218 TVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTT 260


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQKSYKNEREYREYRETSRERSRDRKE 72


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQKSYKNEREYREYRETSRERSRDRKE 72


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 553 NKERKNSKDETEIRDKKRKGTDDVRKTEDSKTD 455
           NKE+ N   + E + +++K  DDV+   + + D
Sbjct: 110 NKEKSNVCLKFEEQKRRKKSLDDVKILRNDRID 142


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQNSYKNEREYRKYRETSKERSRDRKE 72


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQNSYKNEREYRKYRETSKERSRDRKE 72


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     ++  R+ R    E SR RK+
Sbjct: 39  YSRSREREQNSYKNEREYRKYRETSKERSRDRKE 72


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     +   R+ R    E SR RK+
Sbjct: 39  YSRSREREQKSYKNENSYRKYRETSKERSRDRKE 72


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 40  QSTNRLSALHVCQIHGRVCDVFIC*YNVFF-MHNKKKYVLHSFSIFFISVRNFILLRPRN 216
           QS  RL++LH   +HG  C V       F  +   KK  + +F+  + + R F+ L P +
Sbjct: 86  QSWQRLTSLHELHVHG--CKVLRIPEGAFQPLLELKKLTVQTFNSVWGASR-FLELAPDS 142

Query: 217 LL 222
            L
Sbjct: 143 FL 144


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 516 YAIRREKEQMMSGKQKIARQIRGERHEGSRRRKD 415
           Y+  RE+EQ     +   R+ R    E SR RK+
Sbjct: 272 YSRSREREQKSYKNENSYRKYRETSKERSRDRKE 305


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +1

Query: 13  NNTVIXKFCQSTNRLSALHVCQIHGRVCDVFIC*YNVFFMHN 138
           N  VI  FC + +  +  ++  ++  +CD F+      F++N
Sbjct: 66  NGLVIWIFCAAKSLRTPSNMFVVNLAICDFFMMIKTPIFIYN 107


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,145
Number of Sequences: 438
Number of extensions: 3502
Number of successful extensions: 19
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)