Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H08
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc... 30 0.33
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 30 0.33
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 29 0.58
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 28 1.0
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 28 1.3
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 28 1.3
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 1.8
SPAC16E8.17c |||succinate-CoA ligase alpha subunit|Schizosacchar... 26 5.4
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom... 25 7.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 7.1
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.4
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 25 9.4
>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1088
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 643 CSDFLKGYCERGTKCEYRHVNITNETKKRLMRTK 542
CSD+L C EY+HVN E +R K
Sbjct: 706 CSDYLSDLCRTAVLKEYKHVNEDTEDVDDTVRVK 739
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 0.33
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 643 CSDFLKGYCERGTKCEYRH 587
C F +G C G+KCEY H
Sbjct: 117 CLYFARGMCSEGSKCEYLH 135
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 29.1 bits (62), Expect = 0.58
Identities = 10/22 (45%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -3
Query: 646 LCSDFLK-GYCERGTKCEYRHV 584
+C +F K G+CE GT C+ +H+
Sbjct: 290 ICFEFAKYGFCELGTSCKNQHI 311
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = -3
Query: 604 KCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNERNMDCRYYR 434
+C ++ IT T KR+ R Q+ ++ Q+ KP K ++V+ +++E D YY+
Sbjct: 899 RCFFKTEFIT--TLKRINRNIQV-IVGPTIQYCRKPGKVQTVKTAKDETTKDYDYYK 952
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 646 LCSDFLKGYCERGTKCEYRHV 584
+C F KG C+ G+KC HV
Sbjct: 69 ICKYFQKGNCKFGSKCALEHV 89
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 27.9 bits (59), Expect = 1.3
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = -3
Query: 646 LCSDFLKGYCERGTKCEYRH 587
+C +L+G C++G +C++ H
Sbjct: 53 VCKHWLRGLCKKGEQCDFLH 72
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 646 LCSDFLKGYCERGTKCEYRH 587
+C FLKG C+ G KC H
Sbjct: 73 ICKYFLKGNCKFGPKCALSH 92
>SPAC16E8.17c |||succinate-CoA ligase alpha
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 331
Score = 25.8 bits (54), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 394 GVIKPIRCKLGNLPSFI 344
G+I+P +CK+G +PS I
Sbjct: 159 GIIRPGQCKIGIMPSHI 175
>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 7.1
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +3
Query: 564 FVSLVIFTCLYS-HFVPLSQYPLR 632
F+ F C S H VPLSQYP R
Sbjct: 167 FLDSAQFPCKASAHSVPLSQYPYR 190
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = -3
Query: 646 LCSDF-LKGYCERGTKCEYRHV 584
+C D+ L GYC G C++ H+
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHM 210
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = -3
Query: 604 KCEYRHVNITNETKKRLMRTKQITLLKVKNQHTEK 500
+C++++ ++ NE K+ + ++ +KVK E+
Sbjct: 2086 RCDHKYASLCNELKRDDLSADDLSTIKVKLMEREQ 2120
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 25.0 bits (52), Expect = 9.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 469 QNERNMDCRYYRDIKPNFEDTKADCGVIKPIRCKLGNLPS 350
+N +++ YY + N T AD G+I + LPS
Sbjct: 37 KNAKSLHAFYYHGTRLNMNMTCADYGIIHDSAVHIAPLPS 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,413
Number of Sequences: 5004
Number of extensions: 54523
Number of successful extensions: 162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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