Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H08
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    25   0.83 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   5.9  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.8  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
 Frame = -3

Query: 613 RGTKC-EYRHVNITNETKKRLMRTKQ-ITLLKVKNQHTEKPNKNESVEESQNERNMDCRY 440
           R T+C  Y + N  N+         Q        NQ+  K N N   +  QN+   +   
Sbjct: 415 RNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNR 474

Query: 439 YRDIKPN 419
             D K N
Sbjct: 475 QNDNKQN 481


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 525 FNNVICFVLINRFF 566
           FNNVI ++  +RFF
Sbjct: 3   FNNVIKYINFDRFF 16


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 5/23 (21%), Positives = 15/23 (65%)
 Frame = -3

Query: 523 VKNQHTEKPNKNESVEESQNERN 455
           ++N H    N+N++++ + N+ +
Sbjct: 409 IRNTHCVNNNQNDNIQNTNNQND 431


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = -3

Query: 568 TKKRLMRTKQITLLKVKNQHTEKPNKNESVEESQNER 458
           ++KR  R+++      KN+++ +  +  S E S++ R
Sbjct: 268 SRKRYSRSREREQKSYKNENSYRKYRETSKERSRDRR 304


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = +2

Query: 197 KAYAVKKHMRYSPPARETF*KFHFGPRFKVFAHP 298
           KA A      Y P  RE F  ++  P +    HP
Sbjct: 11  KALAFIAEEGYVPSMREKFLGWNVPPEYSDLVHP 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,904
Number of Sequences: 438
Number of extensions: 4273
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)