Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H07
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   3.4  
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    25   5.9  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 371  NCLRACESSRKTETGVKKIIRLLAGGSCRGLFDRVQASGR--TDW 499
            +CL++ E +R +E   +K++RL+      GLF R     R   DW
Sbjct: 1125 SCLKSLEEARHSENNFQKMVRLI---DLIGLFSRYGDLNRINDDW 1166


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 346 IHTYDRIVELPPSLRIF-KENGNRSKE 423
           +HTY  +    PSL  F  EN NR  E
Sbjct: 20  VHTYRTLTSATPSLEFFSNENTNRLSE 46


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 346 IHTYDRIVELPPSLRIFKENGNRSKENN 429
           ++ Y RI+  PP L     NG+ S ENN
Sbjct: 282 VYQYRRIISPPPGLSSMDSNGS-SIENN 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,307
Number of Sequences: 5004
Number of extensions: 42708
Number of successful extensions: 104
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)