Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H07
         (567 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410     30   1.1  
08_02_0405 + 16790720-16791691,16792064-16792135,16794487-167946...    29   3.4  
08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290     29   3.4  
01_05_0126 - 18391879-18391937,18392021-18392102,18392508-183926...    28   4.5  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    27   7.9  
04_03_0141 + 11767781-11767880,11767953-11769262                       27   7.9  

>05_06_0129 - 25856981-25857568,25857652-25858058,25858227-25858410
          Length = 392

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  PPVRESRTFKIPLFYMYYVLTLNRYYEPKLPIANTCDDVIQR 167
           PP  +  TF  P  Y Y+ +  N Y+ P L   NT  + IQR
Sbjct: 280 PPGYDPNTFFHPQ-YAYFRMQPNEYFNPVLGAINTLSESIQR 320


>08_02_0405 +
           16790720-16791691,16792064-16792135,16794487-16794621,
           16794630-16794758
          Length = 435

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 562 FACSG*SSVRLRGWAITQPYCPISTP*RLYSVKQTSA 452
           FA SG    R+  W++ Q Y P+    +LY + Q +A
Sbjct: 206 FAASGDKQWRVSSWSMYQAYTPLPFQGKLYILDQATA 242


>08_02_0307 - 15612761-15612856,15613879-15613950,15614325-15615290
          Length = 377

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 562 FACSG*SSVRLRGWAITQPYCPISTP*RLYSVKQTSA 452
           FA SG    R+  W++ Q Y P+    +LY + Q +A
Sbjct: 204 FAASGDRQWRVSSWSMYQAYTPLPFQGKLYMLDQATA 240


>01_05_0126 -
           18391879-18391937,18392021-18392102,18392508-18392667,
           18392739-18392807,18392850-18392992,18393069-18393203,
           18393283-18393341,18394090-18394187,18394347-18394510,
           18394586-18394647,18394803-18394977,18396331-18396588,
           18396694-18396841,18398458-18398813
          Length = 655

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 528 VVGQSPSLIAQSVRPDACTRSNRPRQLPPARSLIIFFTPVSVFLEDSQ--ARRQ 373
           + GQ PSL   +  P     S   R+  PAR L++     S  L  S   ARRQ
Sbjct: 54  IAGQLPSLTTAAAPPPHLRLSTIARRSSPARQLVVAVASPSTELSRSSTVARRQ 107


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 52  ESRVHSKFHYFICIMY*H*IDIMNLSCQSQIHVTMLSKGVFLHQVSFKS 198
           E R  S+F + +C          +  C    HV M S G+F  ++SF++
Sbjct: 402 EDRTRSEFQFAVCRRCPR---SYHTECLPSYHVLMASNGIFHSEISFET 447


>04_03_0141 + 11767781-11767880,11767953-11769262
          Length = 469

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 42  PPVRESRTFKIPLFYMYYVLTLNRYYEPKLPIANTCDDVIQR 167
           PP      F  P  Y Y+ +  N Y+ P L   NT  + IQR
Sbjct: 357 PPGYNPNAFFHPQ-YAYFGMQPNEYFNPVLGAINTLSESIQR 397


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,192
Number of Sequences: 37544
Number of extensions: 247177
Number of successful extensions: 523
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)