Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H07
         (567 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021410-1|AAX33558.1| 1061|Drosophila melanogaster LD06566p pro...    31   0.82 
AF464851-1|AAM09646.1| 1061|Drosophila melanogaster Smad-ubiquit...    31   0.82 
AF416571-1|AAL09691.1| 1061|Drosophila melanogaster ubiquitin-pr...    31   0.82 
AF216521-1|AAF21125.1| 1061|Drosophila melanogaster E3 ubiquitin...    31   0.82 
AE013599-2520|AAF57824.3| 1061|Drosophila melanogaster CG4943-PA...    31   0.82 

>BT021410-1|AAX33558.1| 1061|Drosophila melanogaster LD06566p
           protein.
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  AAIPYISIPPVRESRTFKIPLFYMYYVLT-LNRYYEPKLP 134
           AA P++ +PP  E RT +    Y Y++ T ++ +++P++P
Sbjct: 508 AARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIP 547


>AF464851-1|AAM09646.1| 1061|Drosophila melanogaster Smad-ubiquitin
           E3 ligase Smurf1 protein.
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  AAIPYISIPPVRESRTFKIPLFYMYYVLT-LNRYYEPKLP 134
           AA P++ +PP  E RT +    Y Y++ T ++ +++P++P
Sbjct: 508 AARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIP 547


>AF416571-1|AAL09691.1| 1061|Drosophila melanogaster
           ubiquitin-protein ligase protein.
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  AAIPYISIPPVRESRTFKIPLFYMYYVLT-LNRYYEPKLP 134
           AA P++ +PP  E RT +    Y Y++ T ++ +++P++P
Sbjct: 508 AARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIP 547


>AF216521-1|AAF21125.1| 1061|Drosophila melanogaster E3 ubiquitin
           ligase protein.
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  AAIPYISIPPVRESRTFKIPLFYMYYVLT-LNRYYEPKLP 134
           AA P++ +PP  E RT +    Y Y++ T ++ +++P++P
Sbjct: 508 AARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIP 547


>AE013599-2520|AAF57824.3| 1061|Drosophila melanogaster CG4943-PA
           protein.
          Length = 1061

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +3

Query: 18  AAIPYISIPPVRESRTFKIPLFYMYYVLT-LNRYYEPKLP 134
           AA P++ +PP  E RT +    Y Y++ T ++ +++P++P
Sbjct: 508 AARPFLDLPPGYEMRTTQQGQVYFYHIPTGVSTWHDPRIP 547


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,412,023
Number of Sequences: 53049
Number of extensions: 436628
Number of successful extensions: 1093
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1093
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2213979693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)