Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H06
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.     29   1.3  
CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical ...    29   1.3  
U41105-9|AAL38967.1|  111|Caenorhabditis elegans Hypothetical pr...    27   6.8  

>EU051652-1|ABS85191.1|  973|Caenorhabditis elegans MEL-46 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 170  GYFRNMNFKGKT--LIDLINSF 111
            GY RNMNF+  T   IDL+NSF
Sbjct: 945  GYLRNMNFQAATQSYIDLMNSF 966


>CU457744-1|CAM36366.2|  973|Caenorhabditis elegans Hypothetical
            protein T06A10.1 protein.
          Length = 973

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -2

Query: 170  GYFRNMNFKGKT--LIDLINSF 111
            GY RNMNF+  T   IDL+NSF
Sbjct: 945  GYLRNMNFQAATQSYIDLMNSF 966


>U41105-9|AAL38967.1|  111|Caenorhabditis elegans Hypothetical
           protein T02G5.14 protein.
          Length = 111

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 154 IFLKYPIYFN*YIMVNPFLYLYIHEQHNFI 243
           + LK+P+ FN +I V  F YL+   Q  +I
Sbjct: 7   LILKFPMKFNLFIDVFNFEYLFSDNQRKYI 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,013,157
Number of Sequences: 27780
Number of extensions: 167502
Number of successful extensions: 263
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)