Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H05
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    29   0.86 
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.5  
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    26   6.0  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.0  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.0  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = -1

Query: 170 ILKCIVEKLVLFSMIVLYMLRIQASPTSKKIQASFCQKKKQSFLGTGQGTRI 15
           I +C+V+ L L  +   +M     S     I  SFC       +G+GQ TR+
Sbjct: 668 IFECLVDNLALLHIFQFWMSNEVTSVNCTGIVLSFCCDNLAK-IGSGQSTRV 718


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 17  CXCLGQCPEMIAFFSDKMKLESFC 88
           C C G  P+ I F +D  +L+ FC
Sbjct: 402 CRCRGDSPDTIEFPTDSDELQEFC 425


>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 171

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = +1

Query: 445 QYVNLRNISKMH*IQRAK*NNQKAF*FSQNMSNFKLIIIRMVCTAIIILYILLIRTG 615
           +++++R IS+      A+  ++ +F FS+  SN+  II  +V  A+I   +LLI  G
Sbjct: 34  EFLDVRRISRPRNFSEAQ--SRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIG 88


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 409 YIIH*KMLIEYSQYVNLR 462
           Y++H KM+IEY+Q  +LR
Sbjct: 439 YVMHEKMVIEYNQAPSLR 456


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 144 GFIFYDSIIYVKNSSFTNKQKDSSFILSEKKAIISGHW 31
           GF+    ++   NS    K+ DS +ILS  K +  G++
Sbjct: 751 GFLRTHCVVLTTNSLNVLKEADSIYILSNGKIVEKGNY 788


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,671
Number of Sequences: 5004
Number of extensions: 49709
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)