Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H05
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    26   0.40 
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   2.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +3

Query: 468 FQNALDSKSKMKQSKGILIFPK-YVK--LQINYYKNGMYSNHNFIYIAN 605
           ++N +D  S    S   +I  + Y +  L I YYK+G     NF++IA+
Sbjct: 271 WRNLMDEHSNRTNSDPRMILTEAYTEFNLTIKYYKSGSTVPFNFMFIAD 319


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 513 GILIFPKYVKLQINYYKNGMYSNHNFIYIAN*DWKVPCLN 632
           G+ I+   V + I  +KNG+ SN NF ++ N + + P LN
Sbjct: 55  GMQIWNDKVFITIPRWKNGVPSNLNF-FLKNDESESPKLN 93


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 285 HYYTTFTLNRISDNLSDEQFYFSNLSLE 202
           H  ++ TLN  SD +SD+Q    NL+L+
Sbjct: 222 HRLSSHTLNHNSDKMSDQQ---ENLTLK 246


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 501 SFCSLNLVHFG 469
           + C LN+VH+G
Sbjct: 505 TICQLNIVHYG 515


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,210
Number of Sequences: 438
Number of extensions: 3489
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)