Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H03
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...   109   3e-25
SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyce...    46   5e-06
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    35   0.009
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   4.1  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   5.4  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.1  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.1  

>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score =  109 bits (261), Expect = 3e-25
 Identities = 47/106 (44%), Positives = 72/106 (67%)
 Frame = -1

Query: 509 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFI 330
           L+L   +G  L+ N + F  PA+ S+ A+E+  K DDT+WLTY++V +  +++EY+S  I
Sbjct: 48  LFLFLNWGGFLLTNLLAFAMPAFFSINAIETTNKADDTQWLTYYLVTSFLNVIEYWSQLI 107

Query: 329 VGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRI 192
           + + P+YWLLK IF+IW  LP ++NG+ +IY  +IRPY   H  RI
Sbjct: 108 LYYVPVYWLLKAIFLIWLALP-KFNGATIIYRHLIRPYITPHVIRI 152


>SPBC30D10.09c |||HVA22/TB2/DP1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 217

 Score = 45.6 bits (103), Expect = 5e-06
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = -1

Query: 410 KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYR 231
           +++  + + YW VY C +  E      + W P Y   K +F +W   P    G+  IY  
Sbjct: 97  EEERRRLMAYWCVYGCVTAAESILGRFLSWVPFYSTSKIVFWLWLLNP-RTQGAAFIYAS 155

Query: 230 IIRPYYQKHHGRIDD 186
            I P+   H   I++
Sbjct: 156 YISPFLSDHKAAINN 170


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 34.7 bits (76), Expect = 0.009
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
 Frame = -1

Query: 509 LYLVFGFGAELICNSIGFVYPAYMSMKALESPQKDDDTKWLTYW--VVYACFSIVEYFSD 336
           L LVFG    LI   IGF+   Y  +  +E PQ      W T +  +++ C  I++    
Sbjct: 654 LILVFG----LIYFIIGFLVYKYELIYQMEHPQHSTGELWSTIFLRMIFGCV-IMQLTMM 708

Query: 335 FIVGWFPLYWLLKCIFVIWCY-LPTEYNGSLVI--YYRIIRPYYQKHH 201
            ++     YWL   IF + C+ + + YN S +I    + +  YY + H
Sbjct: 709 GLMSLRKAYWLSTVIFPLLCFTVISAYNFSTMIRSSMQFVSLYYIRTH 756


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 365 CFSIVEYFSDFIVGWFPLYWLLKC 294
           C  ++EYF  F    + LY LL C
Sbjct: 337 CLRVIEYFRRFGYNDYQLYLLLSC 360


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 383 YWVVYACFSIVEY--FSDFIVGWFPLYWLLKCIFVIWCYLP 267
           Y   Y  FSI  +  FSDF++     YW+ + +   W Y P
Sbjct: 146 YGYFYLFFSIALFLLFSDFLI-----YWIHRALHHRWLYAP 181


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 343  KYSTIEKQAYTTQYVSHFVSSSFCGDSRAF-IDMYAGYTKPIELHINSAPK 492
            ++S+IEK A+  QY     SSSF  D  +F +D Y   T P  + IN   K
Sbjct: 4463 QHSSIEKLAHYLQYEKKESSSSF--DIASFQLDEYLN-TLPSNIPINLVQK 4510


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/66 (18%), Positives = 30/66 (45%)
 Frame = +1

Query: 307 QYNGNQPTMKSEKYSTIEKQAYTTQYVSHFVSSSFCGDSRAFIDMYAGYTKPIELHINSA 486
           ++  + P+ K EK  +++   Y   +    +S     D+++F+D+  G    ++     +
Sbjct: 12  EHMNDSPSTK-EKADSVDISDYIVSHSDDSLSKDIKKDTKSFLDVEHGEISTVDEFEEDS 70

Query: 487 PKPNTK 504
           P P  +
Sbjct: 71  PYPEVR 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,304,211
Number of Sequences: 5004
Number of extensions: 50272
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)