Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H02
         (633 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.9  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   8.6  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 2    YIRCYKVCSSGSFFTNREPGGWSVPRGRNGRV 97
            ++  Y++C      TN    GW V R R GR+
Sbjct: 2101 FLAYYEIC------TNVIKKGWKVVRDRRGRI 2126


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 171 ASADIHAGLMRHGRWGYCSDH 233
           A+ D    +  HG+W Y  D+
Sbjct: 62  AAYDCEGVIRHHGQWNYSPDN 82


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 300  DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 422
            DH H G V      +  +     T  T  Q     + + YW
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSETVSTVPQNKRDDLVNPYW 1214


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 300  DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 422
            DH H G V      +  +     T  T  Q     + + YW
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSETVSTVPQNKRDDLVNPYW 1214


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 300  DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 422
            DH H G V      +  +     T  T  Q     + + YW
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSETVSTVPQNKRDDLVNPYW 1214


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/41 (24%), Positives = 14/41 (34%)
 Frame = +3

Query: 300  DHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 422
            DH H G V      +  +     T  T  Q     + + YW
Sbjct: 1174 DHHHLGAVTEEGGDESANETDSETVSTVPQNKRDDLVNPYW 1214


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,345
Number of Sequences: 336
Number of extensions: 2319
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16292796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)