Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H02
         (633 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    28   0.97 
SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subuni...    26   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.1  

>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = +3

Query: 252 SYDGSS---DCMGHDCRARDHIHAGLVRNRSWSD--DGSTVSQV 368
           SYD +S   D   H C  +  +H+  VR+  WSD  DGS ++ V
Sbjct: 253 SYDMTSRIFDPEQHSCIRKVDLHSEFVRDVDWSDFGDGSWIASV 296


>SPCC16C4.12 |||NatB N-acetyltransferase complex catalytic subunit
           Nat3 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -3

Query: 511 INLVLMYVPAPPSIATLLPHQSSHTPPTLHQYLLVTVMDTG*KNVPWVT*LTVLPSSLQL 332
           I+  L Y+   PS+  +   +S  + PTL  Y++     TG +    VT +TV P+S +L
Sbjct: 29  ISFYLSYLNKWPSLCVV--QESDLSDPTLMGYIMGKSEGTGKEWHTHVTAITVAPNSRRL 86


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/45 (31%), Positives = 26/45 (57%)
 Frame = +3

Query: 111  IRSDDSVRVWCDRSMCYYSGASADIHAGLMRHGRWGYCSDHGGSI 245
            I+ +D V V+ D+S+ YYS     +  G++R G + +  +H  S+
Sbjct: 1802 IKKNDVVAVFIDKSLDYYS-----LMLGVLRIGAFFFPLEHCSSL 1841


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,935
Number of Sequences: 5004
Number of extensions: 36038
Number of successful extensions: 79
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)