Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H02
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0362 - 2843659-2844468,2844669-2844699,2844824-2844903,284... 31 0.76
08_02_0580 - 18953208-18953513,18953668-18953868,18953929-189540... 31 1.0
03_06_0105 + 31675083-31675313,31676171-31676815 29 2.3
06_01_0220 - 1673657-1675765 29 3.1
03_03_0062 + 14170303-14170637,14171799-14172029,14172224-141723... 29 4.1
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 29 4.1
01_05_0403 - 21817691-21817747,21818070-21818171,21818184-218182... 29 4.1
05_04_0423 - 21126038-21126556 28 7.1
02_01_0703 + 5251901-5251950,5252783-5253554 28 7.1
04_01_0039 + 455760-457631 27 9.4
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 27 9.4
>01_01_0362 -
2843659-2844468,2844669-2844699,2844824-2844903,
2846680-2847831
Length = 690
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -3
Query: 151 ERSHHTRTESSLLMPIMLDSSIPPPWYTPAPWFTVG 44
+++ R E + M + SS+ PP + PAPW +G
Sbjct: 63 QQTRFYRCEKMIKMRVTQQSSVCPPTFLPAPWSPLG 98
>08_02_0580 -
18953208-18953513,18953668-18953868,18953929-18954009,
18954096-18954410,18954493-18954636,18954733-18954822,
18954907-18954983,18955122-18955182,18955264-18955490,
18955581-18955740,18955825-18956025,18956114-18956209,
18956380-18956565,18956641-18956810,18957044-18957275,
18958652-18959029
Length = 974
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 243 IGVSYDGSSDCMGHDCRARDHIHAGLVRNRSWSDDGSTVSQVTQGTFFQPVSMTVTSKYW 422
I + G C+G R + G + N ++S +G T S G PV+ + S W
Sbjct: 716 IAIMAKGKLRCIGTSIRLKSKFGTGYIANVNFSGNGHTQSPNINGNTEVPVNPNIESVKW 775
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = -2
Query: 191 RVDVRTSPAVVAHGAV-----APYAHGIITPYAH--HAGLFHSAPLVHS 66
R+D+ SP G V PY G +TP AH H+G + P+ +S
Sbjct: 203 RMDMSLSPITYYDGMVHVHPYTPYTFGCVTPLAHLTHSGYGYGGPIDYS 251
>06_01_0220 - 1673657-1675765
Length = 702
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 168 GASADIHAGLMRHGRWGYCSDHGGSIGVSYDGS 266
G +A I+ L R G D GG +G+ YDGS
Sbjct: 317 GEAAQIYCELARLGAAMRVIDVGGGLGIDYDGS 349
>03_03_0062 +
14170303-14170637,14171799-14172029,14172224-14172326,
14173284-14173513,14174258-14174456
Length = 365
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 153 MCYYSGASADIHAGLMRHGRWGYCSDHGGSIGVSYDGSSDCMGHDC 290
+C S +S+ G WG + GG + + G DC G C
Sbjct: 42 LCLLSSSSSSSSRTSSLRGSWGSAAAKGGKKYLYWGGRVDCPGKHC 87
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 396 SMTVTSKYWCSVGGVCEDWCGNSVAIDGGA 485
S T++ + W +GG+ E G SV I G A
Sbjct: 78 SKTISGRVWTEIGGLDEAAAGRSVLIRGAA 107
>01_05_0403 -
21817691-21817747,21818070-21818171,21818184-21818272,
21818612-21818714,21819938-21820223,21820577-21820725,
21821500-21821612,21821764-21821922,21822272-21822341
Length = 375
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 182 VRTSPAVVAHGAVAPYAHGII-TPYAHHAGLFHSAPL 75
++ PA+V G + Y G+ + YAHHAG H+ L
Sbjct: 28 IQRRPALVNGGGGSSYKDGVRGSSYAHHAGGLHTGVL 64
>05_04_0423 - 21126038-21126556
Length = 172
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 14 YKVCSSGSFFTNREPGGWS-VPRGRNGRVQHDGH 112
YK+ S SF + + GGW + RG NG G+
Sbjct: 129 YKMNSDASFDVSTKTGGWGFLARGSNGEFLEGGY 162
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 151 ERSHHTRTESSLLMPIMLDSSIPPP 77
++ H E L P+++DSS+PPP
Sbjct: 91 DKCHFAHGERELGKPMLMDSSMPPP 115
>04_01_0039 + 455760-457631
Length = 623
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 174 SADIHAGLMR-HGRWGYCS-DHGGSIGVSYDGS 266
+A I+ L++ HG G + D GG +GV YDG+
Sbjct: 276 AAGIYCALVKEHGATGMTTLDCGGGLGVDYDGT 308
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 150 SMCYYSGASADIHAGLMRHGRWGYCSDHGGSIGVSYDGSSDCMG 281
S CY + A+A H+ RHG G S+ V +S G
Sbjct: 35 SFCYAAAATATAHSSSFRHGISGAALSANSSVPVPLYNASAAAG 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,660
Number of Sequences: 37544
Number of extensions: 321538
Number of successful extensions: 1188
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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