Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_H02
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related prec...    32   1.5  
DQ314873-1|ABC40732.1| 4544|Homo sapiens low density lipoprotein...    32   1.5  
AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-re...    32   1.5  
AB209498-1|BAD92735.1| 2359|Homo sapiens low density lipoprotein...    32   1.5  
BC064844-1|AAH64844.1|  664|Homo sapiens DCST1 protein protein.        30   5.9  
AL451085-34|CAI13272.1|  706|Homo sapiens DC-STAMP domain contai...    30   5.9  
AL451085-33|CAI13271.1|  664|Homo sapiens DC-STAMP domain contai...    30   5.9  
AK057347-1|BAB71440.1|  706|Homo sapiens protein ( Homo sapiens ...    30   5.9  

>X13916-1|CAA32112.1| 4544|Homo sapiens LDL-receptor related precursor
            (AA -19 to 4525) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 290  PG*RSHPRGTGEKPQLER*WEHCKS 364
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>DQ314873-1|ABC40732.1| 4544|Homo sapiens low density
            lipoprotein-related protein 1 (alpha-2-macroglobulin
            receptor) protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 290  PG*RSHPRGTGEKPQLER*WEHCKS 364
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>AF058427-1|AAC64265.1| 4544|Homo sapiens lipoprotein receptor-related
            protein protein.
          Length = 4544

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 290  PG*RSHPRGTGEKPQLER*WEHCKS 364
            P  R  PR TG+K +L++ WEHC++
Sbjct: 4218 PKCRCQPRYTGDKCELDQCWEHCRN 4242


>AB209498-1|BAD92735.1| 2359|Homo sapiens low density
            lipoprotein-related protein 1 variant protein.
          Length = 2359

 Score = 32.3 bits (70), Expect = 1.5
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 290  PG*RSHPRGTGEKPQLER*WEHCKS 364
            P  R  PR TG+K +L++ WEHC++
Sbjct: 2033 PKCRCQPRYTGDKCELDQCWEHCRN 2057


>BC064844-1|AAH64844.1|  664|Homo sapiens DCST1 protein protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 414 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 494
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AL451085-34|CAI13272.1|  706|Homo sapiens DC-STAMP domain
           containing 1 protein.
          Length = 706

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 414 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 494
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AL451085-33|CAI13271.1|  664|Homo sapiens DC-STAMP domain
           containing 1 protein.
          Length = 664

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 414 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 494
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


>AK057347-1|BAB71440.1|  706|Homo sapiens protein ( Homo sapiens
           cDNA FLJ32785 fis, clone TESTI2002251. ).
          Length = 706

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +3

Query: 414 KYWCSVGGVCEDWCGNSVAIDGGAG-TY 494
           K++C +  V E WC N + ++G  G TY
Sbjct: 290 KFFCGIAKVMEVWCRNRIPVEGNFGQTY 317


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,730,667
Number of Sequences: 237096
Number of extensions: 1681938
Number of successful extensions: 4409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4408
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)