Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P04_pT_H02
(633 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 21 7.5
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.9
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 314 GTGEKPQLER*WEHCKSSDPGNVF 385
G+GE P E WE+ SD + F
Sbjct: 335 GSGEIPLEEEEWENENESDYQDAF 358
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = -2
Query: 119 TPYAHHAGLFHSAPLVHSSPLVH 51
TP HH + H +H++P H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHH 433
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 131 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 164
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 199 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 232
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 333 SWSDDGSTVSQVTQGTFFQPVSMTVTSKYWCSVG 434
SW+ DG+ V V +S +T+ W +G
Sbjct: 199 SWTYDGNQVDLVLSSETGGDLSDFITNGEWYLIG 232
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,992
Number of Sequences: 438
Number of extensions: 2601
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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