Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G23
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    28   1.8  
AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a prot...    28   1.8  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    27   4.2  
U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical p...    26   5.6  
U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical pr...    26   7.4  
AC006723-6|AAF59425.1|  492|Caenorhabditis elegans Hypothetical ...    26   7.4  

>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 16  NIGKPNVQLFLLNIYINYXYSNLTFLN 96
           NIGK  ++L   NI+ N  Y+N+  LN
Sbjct: 166 NIGKEIMKLISTNIFYNSLYANIEVLN 192


>AC199172-10|ABO33271.1|  302|Caenorhabditis elegans F-box a protein
           protein 37 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 233 KNILXYKLGLRXQSKSVYKYHLINLLIDI 319
           K  L Y L L   SK +Y+ H ++ L+DI
Sbjct: 103 KLFLKYALYLEVWSKDIYREHFVSSLVDI 131


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 7   CTTNIGKPNVQLFLLNIYINYXYSNLTFLN 96
           CTT IG  N  +   NIY +Y  +  TF N
Sbjct: 730 CTTVIGSKNCYMSSSNIYSSYAGNGNTFNN 759


>U80029-10|AAB37589.1|  460|Caenorhabditis elegans Hypothetical
           protein T20D4.8 protein.
          Length = 460

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 31  NVQLFLLNIYINYXYSNLTFLN 96
           NV + L NI+ NY ++N+  LN
Sbjct: 128 NVNVTLTNIFYNYLHANIEVLN 149


>U80029-9|AAB37588.1|  459|Caenorhabditis elegans Hypothetical
           protein T20D4.9 protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  NVQLFLLNIYINYXYSNLTFLN 96
           NV L L NI+ N  Y+N+  LN
Sbjct: 103 NVNLTLTNIFYNSLYANIEVLN 124


>AC006723-6|AAF59425.1|  492|Caenorhabditis elegans Hypothetical
           protein Y19D10B.6 protein.
          Length = 492

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 31  NVQLFLLNIYINYXYSNLTFLN 96
           NV L L NI+ N  Y+N+  LN
Sbjct: 126 NVNLTLTNIFYNSLYANIKVLN 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,375,582
Number of Sequences: 27780
Number of extensions: 75185
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)