Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G22
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0626 + 9950100-9950269,9950387-9950516,9950616-9950684           35   0.031
08_01_0074 + 530207-532603                                             34   0.071
08_01_0054 - 367770-370166                                             33   0.16 
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250...    28   4.7  
06_03_0498 - 21432958-21434245,21434579-21435310,21435502-214357...    27   6.2  

>03_02_0626 + 9950100-9950269,9950387-9950516,9950616-9950684
          Length = 122

 Score = 35.1 bits (77), Expect = 0.031
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
 Frame = -2

Query: 307 RYGVPFILFVVGGSFGL-----------REWTQIRYQFSQVKGVSKEEAEKMGLHREKTV 161
           RYG+P I   V G+ GL           +E   + ++  +            G ++ K +
Sbjct: 34  RYGLPLISLTVFGAVGLAHLIQGSKEVTKEKEDMEWEVVETTKALSRTGPVEGAYKPKKL 93

Query: 160 SLDTAYEEIQ-KLDIDNWENKRGPRPWE 80
           SL+   + +Q K+DI+N++ KR PRP E
Sbjct: 94  SLEDELKALQQKVDINNYDYKRIPRPNE 121


>08_01_0074 + 530207-532603
          Length = 798

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 17/46 (36%), Positives = 29/46 (63%)
 Frame = +3

Query: 255 LKPNDPPTTNNINGTPYLKVLRLLMAINVFRMLSTRAVNPVVIIFS 392
           +KPN+      ING  Y K  R+  A ++FR ++++ VNP ++I+S
Sbjct: 517 VKPNEVTYNTIING--YCKNGRIEDACSLFRQMASKGVNPGIVIYS 560


>08_01_0054 - 367770-370166
          Length = 798

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = +3

Query: 255 LKPNDPPTTNNINGTPYLKVLRLLMAINVFRMLSTRAVNPVVIIFS 392
           +KPN+      ING  Y K  R+  A ++FR ++++ VNP ++ +S
Sbjct: 549 VKPNEVTYNTMING--YCKNGRIEDAFSLFRQMASKGVNPGIVTYS 592


>09_01_0175 -
           2509014-2509064,2509389-2509490,2509603-2509729,
           2509852-2511564,2512335-2512424,2512533-2512801,
           2513118-2513687,2513703-2514065
          Length = 1094

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 181 LHREKTVSLDTAYEEIQKLDIDNWENKRGPRPWEINESKK 62
           + R+   +L    EEI +L  +N + K GP PW +  +K+
Sbjct: 631 MKRQHDSTLQEKTEEIFRLKRENLK-KEGPNPWHLRNNKE 669


>06_03_0498 -
           21432958-21434245,21434579-21435310,21435502-21435788,
           21435955-21436026,21436130-21436264,21436887-21436925
          Length = 850

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +2

Query: 125 QFLYFFICSIQRNSFFSVKAHFLCFFLTHTFYL*KLISNLCPFPQT--KRSSYNK*YKRN 298
           +F Y +   I+RN+ ++V+   L +     + L    SN CP  QT  +    N  YK +
Sbjct: 452 EFEYLWKDFIRRNNLYNVRYFQLIWVTRKRWALVYFKSNWCPLIQTTARSEGTNSRYKAD 511

Query: 299 TISKSSSLAY 328
             S  S  A+
Sbjct: 512 ICSSHSVSAF 521


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,737,352
Number of Sequences: 37544
Number of extensions: 219789
Number of successful extensions: 438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)