Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G22
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    29   2.4  
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    27   5.6  
Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = -2

Query: 274  GGSFGLREWTQIRYQFSQVKGVSKEEAEKMGLHREKTVSLDTAYEEIQKLDIDNWENKRG 95
            G  F L +W  + Y+    + +    A+K+ L RE+ V       E Q+ + + W+    
Sbjct: 1118 GQEFVLIKWKSLGYEEVTWEPIEMIPADKVELWRERQVIDPAKIREKQRPEPEEWKKMST 1177

Query: 94   PRPWEINES 68
             + W+   S
Sbjct: 1178 SKVWKNGNS 1186


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -2

Query: 301 GVPFILFVVGGSFGLR 254
           GVPF++ V+GGSF LR
Sbjct: 42  GVPFLMGVLGGSFWLR 57


>Z93374-5|CAB07557.1|  935|Caenorhabditis elegans Hypothetical
           protein C06C6.7 protein.
          Length = 935

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 386 NNDNRIYSSRRQHTKYINCHKQAKN 312
           NN++  YSSRRQ  + +N H +  N
Sbjct: 34  NNESLDYSSRRQFVRAVNPHDKHSN 58


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 322 CLWQLMYFVCCLREL*ILLSLFSV 393
           C W ++Y +CCL    I   ++SV
Sbjct: 87  CFWDIIYLLCCLSTYCIPSLIYSV 110


>Z29094-7|CAA82342.2|  453|Caenorhabditis elegans Hypothetical
           protein C07A9.8 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 80  FPWSRASFVFP-IINIQF-LYFFICSIQRNSFFSVKAH 187
           + W     ++P ++N+    YFF+C   R  F S  AH
Sbjct: 270 YDWVPIPLMYPQLVNMAVHTYFFLCIFTRQFFISADAH 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,007,913
Number of Sequences: 27780
Number of extensions: 231234
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)