Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G21
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical pr...    31   0.80 
U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical ...    27   9.9  

>L16685-2|AAY43982.1|  262|Caenorhabditis elegans Hypothetical
           protein ZC21.9 protein.
          Length = 262

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 278 RNVPRSHLAMVLPGVFSGFTSIIISRLGSSV-KCGGNA 388
           R+   +HLA V+PGVF+   ++ I++L SS   C  N+
Sbjct: 13  RDQRHAHLAQVVPGVFTSLVALSIAQLTSSCPSCNTNS 50


>U80837-2|AAB37902.1|  315|Caenorhabditis elegans Hypothetical
           protein F07E5.2 protein.
          Length = 315

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = +1

Query: 553 VFGSFR*IRSRRQVVPSPEGDDDSVCSFDGLMYRVWFENISFDYLDLVFXM 705
           +F     I  R ++V   E ++  +  FDG    VWF    F +L++   M
Sbjct: 256 IFKGINYIEKRNRIVQCQEREEYRIERFDGTEALVWFNPNRFPFLEMTVMM 306


>U23527-5|AAC46572.2|  915|Caenorhabditis elegans Hypothetical
           protein K09E2.1 protein.
          Length = 915

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 602 VPRVMTTASVPSTASCTESGSRTFPLTISTLS 697
           VP   T+ +VPST   T S SRT   + +T S
Sbjct: 582 VPSTTTSVTVPSTQKATPSPSRTTKKSTTTTS 613


>AF040645-1|AAB94973.1|  377|Caenorhabditis elegans Hypothetical
           protein F52C6.5 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 337 FNNHFSAWVVC--EVWRKRGYPI 399
           FN H   W++C  E+W +R + I
Sbjct: 128 FNEHLGIWLICEKEIWEERRWSI 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,059,886
Number of Sequences: 27780
Number of extensions: 357520
Number of successful extensions: 997
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)