Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G20
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    26   3.4  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    25   4.5  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   6.0  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.9  

>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 289 LCIDGHPRVLYCGGESAFDDLTSTCVSADEVGACPA 182
           LC+D H R+++   ++   DL +  V A+   A  A
Sbjct: 224 LCVDQHGRIVFDSSDTVIKDLENKDVEAESQEAVVA 259


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -2

Query: 315 LTTIARSISCASMGILASSIAVVSPHSTI*PQHVSPPMK*EHVLLS*GPQQSVPRTTQS 139
           L+T   SI+C+ +       A V   S +    VSPPM  E V  S    +S+P    S
Sbjct: 281 LSTACGSIACSMLTKTTPHRASVDILSNLHESTVSPPMADESVQRSSEVSKSIPNVELS 339


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 414 SPTAMLKLSSDSVAPKYQ*VENLVPQ 337
           SPTA++ L  +  APK+  + N+ P+
Sbjct: 767 SPTALIGLDKNLNAPKFSFISNVRPK 792


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 376 CPEVPISRELGPPAGYRYYRSD-NNCQKYFLCIDG 275
           C    +SR  G P G+   + D NN  K+  C+ G
Sbjct: 510 CRTCALSRMRGRPVGFCPLQLDFNNWPKFLCCLQG 544


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,525
Number of Sequences: 5004
Number of extensions: 34566
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)