Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G19
         (656 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0189 + 41875088-41875149,41875322-41875392,41875809-418759...    29   2.5  
03_02_0199 - 6347980-6348225,6348300-6348341,6348824-6348978,634...    29   3.3  
12_01_0928 - 9204979-9205140,9205266-9205324,9205835-9205880           27   9.9  
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619...    27   9.9  

>01_07_0189 +
           41875088-41875149,41875322-41875392,41875809-41875902,
           41876285-41876360,41877130-41877293,41877428-41877605,
           41877687-41877809,41877895-41877990,41878091-41878372
          Length = 381

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = -2

Query: 637 HNFNRHYTTNRAPLGFHFHASWLKSKKEYRDELIKFIEEMLEKNDVYFTSLIQV 476
           HN  +H ++NR  LG  F  SW   +KE+     K +++ +E   V F  LI+V
Sbjct: 181 HNRVQHSSSNRHGLGHAFRNSW--RRKEHES---KSVKKTVEIGMVEFVGLIKV 229


>03_02_0199 -
           6347980-6348225,6348300-6348341,6348824-6348978,
           6349369-6349475,6349608-6349733,6349809-6349890,
           6350057-6350130,6351184-6352631,6353391-6353540,
           6353664-6353906,6354009-6354266,6355554-6356015
          Length = 1130

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 508 NDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCD 401
           ND+  TSLI   + ++       LR+F+EW  +  +
Sbjct: 414 NDIKITSLINTAELLKKEKSTDWLREFKEWMDENME 449


>12_01_0928 - 9204979-9205140,9205266-9205324,9205835-9205880
          Length = 88

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -2

Query: 397 KGQPFCS-LPNACPLTTRELPGETL 326
           K + +C+ +PN  PL TRE+ GE+L
Sbjct: 51  KKKDYCNEIPNKWPLLTREVKGESL 75


>01_01_0009 +
           57658-60086,60855-60935,61094-61295,61385-61905,
           61996-62114,62248-62345
          Length = 1149

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/64 (25%), Positives = 34/64 (53%)
 Frame = -2

Query: 565 SKKEYRDELIKFIEEMLEKNDVYFTSLIQVIQWMQNPTELSSLRDFQEWKQDKCDVKGQP 386
           SK +  D++ +  +EM E+++V +  +I    W  N    + LR F+E ++   D +  P
Sbjct: 282 SKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW--NQCAATVLRLFREMQKLGFDRQVLP 339

Query: 385 FCSL 374
           + ++
Sbjct: 340 YATM 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,168,612
Number of Sequences: 37544
Number of extensions: 304225
Number of successful extensions: 815
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)