Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G18
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   1.4  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    26   2.5  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    24   10.0 

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +2

Query: 41  IDITHKSLPIATXTKYRNQKIRRPPM 118
           + +TH S P++T + +++ + R PP+
Sbjct: 44  VPLTHNSYPLSTPSSFQHGQTRLPPI 69


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 185 WFFVYEVTSTKASRDMFKELLLSLVAALFSGFG 87
           W F+Y     +     F  LL++LV ++F GFG
Sbjct: 455 WGFMYVQLDVRFFYFTFPLLLITLVRSMFIGFG 487


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 224 LDVEKLPGLLATCTGSLIQFRDSFLWL 304
           L+ +K    LAT   SL+  +D+  WL
Sbjct: 827 LEGDKRKAFLATVEDSLVSSKDNLTWL 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,481,985
Number of Sequences: 5004
Number of extensions: 27117
Number of successful extensions: 73
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)