Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G18
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical ...    61   3e-10
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    28   2.1  
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    28   2.1  
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p...    28   2.1  
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    28   2.1  
AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine r...    28   2.8  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    27   3.7  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    27   3.7  
AF003740-6|AAK68240.1|  238|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z81500-4|CAB04097.1|  254|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family ...    26   8.7  
AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical...    26   8.7  

>AC024833-1|AAK85505.1|   79|Caenorhabditis elegans Hypothetical
           protein Y57E12AM.1 protein.
          Length = 79

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 31/79 (39%), Positives = 45/79 (56%)
 Frame = -3

Query: 287 LEIESMIRYTSPINPAVFPHXXXXXXXXXXXXTAWFFVYEVTSTKASRDMFKELLLSLVA 108
           ++I  M RYT+P+N A  P              A F + +VTSTK +R++ KEL ++  +
Sbjct: 1   MDISKMNRYTAPVNFASLPLLTTFLCGVGLLLLATFTMIQVTSTKYNRNLLKELFIAATS 60

Query: 107 ALFSGFGIXXXXLWVGIYV 51
           ++F GFG     LWVGIYV
Sbjct: 61  SVFLGFGSVFLLLWVGIYV 79


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
            protein F35D11.11a protein.
          Length = 1840

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 250  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNEVIGR 387
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE   R
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNEESSR 1406


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
            protein F35D11.11c protein.
          Length = 1898

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 250  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNEVIGR 387
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE   R
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNEESSR 1406


>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
            protein F35D11.11d protein.
          Length = 1671

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 250  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNEVIGR 387
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE   R
Sbjct: 1123 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNEESSR 1166


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
            protein F35D11.11b protein.
          Length = 1911

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +1

Query: 250  IGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQRSLRNEVIGR 387
            + D   +I+ + R +     ERNTIEN+   T Q Q  L NE   R
Sbjct: 1363 LADRQMVIERVERQLVHITEERNTIENR--MTSQRQMYLTNEESSR 1406


>AF068709-13|AAO26012.1|  321|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 56 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 99  FWFRYFVLVAMGRDLCVIS 43
           FWFRY+VLV+ G   C+ S
Sbjct: 142 FWFRYYVLVSFG--FCIYS 158


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 210 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 67
           +N+++L  L    R  +Y S      ++ ++ +TFI+G  +I W  ++VL  +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
 Frame = -2

Query: 210 RNRNILHGLVLRLRSYKY*S-----LKRYVQRVTFIIGGRLIFWFRYFVLVAM 67
           +N+++L  L    R  +Y S      ++ ++ +TFI+G  +I W  ++VL  +
Sbjct: 518 KNKSVLSALNFFQRKKEYKSRSENRARKALRTITFILGSFIILWTPFYVLATI 570


>AF003740-6|AAK68240.1|  238|Caenorhabditis elegans Hypothetical
           protein C41D11.5 protein.
          Length = 238

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 229 CGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 360
           CG T   + D  R    I+R +FM    +    N+TNKT +  R
Sbjct: 133 CGDTCAELNDFER--RKINRDLFMHSCSKEQQSNETNKTNKNHR 174


>Z81500-4|CAB04097.1|  254|Caenorhabditis elegans Hypothetical
           protein F11D11.5 protein.
          Length = 254

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 192 EEYSYSEQQKG*MWKNCRVYWRRVP 266
           E YS+ +   G ++KNC   W R P
Sbjct: 94  EIYSWKKTDNGWIYKNCNDGWTRYP 118


>Z70718-9|CAA94678.2|  371|Caenorhabditis elegans Hypothetical
           protein C04G2.9 protein.
          Length = 371

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -2

Query: 267 PVHVANKPGSFSTSNLFVARNRNILHGLVLRLRSYKY 157
           PVHV N  G  S   + VA  + IL  + +R   Y Y
Sbjct: 302 PVHVNNHKGDISVGVVNVAGGKQILAKVDVRNEKYGY 338


>AF000262-10|AAN60530.1|  350|Caenorhabditis elegans Twik family of
           potassium channelsprotein 37 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 162 KY*SLKRYVQRVTFIIGGRLIFW 94
           K+ ++  +V  V +IIGG L+FW
Sbjct: 60  KFNTIIAFVVLVAYIIGGALLFW 82


>AC025716-18|AAT81178.1|  998|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.3 protein.
          Length = 998

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 22/54 (40%), Positives = 26/54 (48%)
 Frame = +1

Query: 199 IPIPSNKKVRCGKTAGFIGDVYRIIDSISRLIFMAILERNTIENKTNKTRQTQR 360
           IP+PSNKK+  GK AG   D   ++     LI M         NK NK   TQR
Sbjct: 631 IPMPSNKKIVYGK-AG--KDATMLLSDDGSLIAMG-------SNKHNKLNLTQR 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,042,144
Number of Sequences: 27780
Number of extensions: 144782
Number of successful extensions: 391
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)