Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G17
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces po...    27   2.0  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    27   2.7  
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo...    25   8.1  

>SPBC14F5.01 ||SPBC1861.10|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 278

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +1

Query: 220 WI*INKLDNIPLISTNISRSNNTRLTNVSTQYMENAKKVLKRNLNTYSI 366
           W  I+ L  +P++    S+  N  L +  T++++    + KRNL+T++I
Sbjct: 87  WSSIDSL--VPIVVDLPSKKQNRLLQSCITKHVDRLLDLCKRNLSTFTI 133


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = -2

Query: 338 NTFLAFSMYCVETLV---RRVLFDRDILVLI 255
           N+ +++S+YC ETLV   RR  F  D L+L+
Sbjct: 286 NSKISYSLYCNETLVSFFRRPAFSPDGLLLV 316


>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
           Tip1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 232 NKLDNIPLISTNISRSNNTRLTNVSTQYMENAKKVLKRNL 351
           N   +IP + TN+S S+N  +  +S+  +   +K+L++ +
Sbjct: 104 NLQSSIPRL-TNVSSSSNLSMNTISSTALTPTEKILQKRI 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,558
Number of Sequences: 5004
Number of extensions: 49242
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)