Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G15
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    27   0.12 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 26.6 bits (56), Expect = 0.12
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 202 CSFASFFDSLFWWKAPYRTPTVRKDQRP 285
           CS A  F ++ WW+A  RT  V +D+ P
Sbjct: 173 CSSAISFPAIVWWRA-VRTEEVPEDKCP 199


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 2.5
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = -1

Query: 352 NYITKCQIYHTELLCVYRL*SSLDVGPSSP 263
           N  TKC     + LC Y L   + V P +P
Sbjct: 441 NSKTKCCFAQDDGLCPYTLKHKIRVPPGTP 470


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 328  KSDILLYNCYTVKQFLYDTFWKNLI 402
            ++D   Y+CY    F +DT    LI
Sbjct: 1338 RTDAGEYSCYVENTFGHDTVTHQLI 1362


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 234  EQAIKERSETTRD*SQREGHPRCQAEGGERKSL 136
            E + ++ ++  R   +RE H   Q E  +RK+L
Sbjct: 1411 EDSTRDSTKLDRSSREREVHNGGQQEDRDRKTL 1443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,663
Number of Sequences: 438
Number of extensions: 1903
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)