Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P04_pT_G14
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces po...    44   3e-05
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   0.85 
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    28   1.5  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   4.5  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    26   4.5  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   4.5  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    25   7.9  
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe...    25   7.9  

>SPBC1105.02c |lys4||homocitrate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 418

 Score = 43.6 bits (98), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 35/70 (50%)
 Frame = -1

Query: 564 MGCYEVSLGDTIGVGTAGSVRRLLHEILTVAKPEQLALHFHDTYGQGLSNLLAGLEFGIK 385
           +G   V + DT+G  T   V  L+  +  V   + +  HFH+  G  ++N    LE G  
Sbjct: 187 IGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGAT 245

Query: 384 TVDSSISGLG 355
            +D+SI G+G
Sbjct: 246 HIDTSILGIG 255


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 327 GNLATEDLVYFLYGLGVNTDVDLVKIIEAGRYISNFLGK 211
           G     DLVY L  L +  +  LV+++ A R ++N+L K
Sbjct: 382 GRDEAHDLVYRLCHLSIQENKPLVELLLAERQVTNYLSK 420


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 532 DWSRHGRLRPPTSS*NPHCRKTGTTS 455
           +W R  R+ PP  +  PH  +T T S
Sbjct: 477 EWRRRYRVAPPAENEKPHTSRTNTAS 502


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +2

Query: 353 PPSPEMEESTVLIPNSRPASK 415
           PPSP+++ S  + P S+P S+
Sbjct: 165 PPSPKVDTSNTVSPGSKPISE 185


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 47  WNKYLITIIECLFLSLN-RYCNINYLYEQLQDA 142
           + +  + +I   F+S +  YC I YLY  L DA
Sbjct: 35  FTRVFLVLISLYFMSWHPNYCTIVYLYSSLLDA 67


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 21/92 (22%), Positives = 36/92 (39%)
 Frame = +2

Query: 14   RYKSKYLLSCVWNKYLITIIECLFLSLNRYCNINYLYEQLQDASLTIXXXXXXXXXXXXX 193
            +YK K L+S +WN  +I++     LS++    + Y     ++   T+             
Sbjct: 808  KYKPKILISQIWNAIVISMYREHLLSIDHVQRLLYHQVPAEEGRRTLRTPTFFVSQDDNI 867

Query: 194  XXDSVGFPRKLEMYRPASIIFTRSTSVLTPRP 289
               +  FP   E  R  S  F +S +   P P
Sbjct: 868  VHTTF-FPANSEAERRLS-FFAQSLATPIPEP 897


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 362 PEMEESTVLIPNSRPASKLESP 427
           PEM+  +   P++RPAS  E+P
Sbjct: 101 PEMKVGSPYTPSTRPASHTEAP 122


>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -1

Query: 669 VKLNYNTLTRPSDXRTVHASRSSVWQSQITEQLIAMGCYEVSLGDTIGVGTAGSVRRLLH 490
           VKL   T T  +D  T   +RS + + Q+T  +I      +     IG+ TA S      
Sbjct: 223 VKLEPYTNTDSTDLTTKEEARSFLLKQQLTAFIILESSI-ILHSVIIGLTTAVSG----E 277

Query: 489 EILTVAKPEQLALHFHDTY-GQGLSNLLAGLEFGIKT 382
           E  T+       + FH  + G GL + LAG+ +G KT
Sbjct: 278 EFKTLFP----VIIFHQAFEGCGLGSRLAGMAWGPKT 310


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,181
Number of Sequences: 5004
Number of extensions: 59667
Number of successful extensions: 144
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)